RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CLEC1BQ9P126 229 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 CLIP2Q9UDT6 1046 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 TXNP10599 105 aaKnown RBP10.94□□□□□ -0.66
USP28-205ENST00000537706 BMP3P12645 472 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 ALDH5A1P51649 535 aaPredicted RBP10.94□□□□□ -0.66
USP28-205ENST00000537706 ANGPT1Q15389 498 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 RSPO4Q2I0M5 234 aaPredicted RBP10.94□□□□□ -0.66
USP28-205ENST00000537706 NAALADL2Q58DX5 795 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 APBB2Q92870 758 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 MKNK2Q9HBH9 465 aa10.94□□□□□ -0.66
USP28-205ENST00000537706 FAM186AA6NE01 2351 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 TMEM232C9JQI7 657 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 GNAI2P04899 355 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 PDE6AP16499 860 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 LCORLQ8N3X6 602 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 RUBCNQ92622 972 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 NEK1Q96PY6 1258 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 BARX2Q9UMQ3 279 aaPredicted RBP10.93□□□□□ -0.66
USP28-205ENST00000537706 DDX49Q9Y6V7 483 aaKnown RBP10.93□□□□□ -0.66
USP28-205ENST00000537706 SPTBN4Q9H254 2564 aa10.93□□□□□ -0.66
USP28-205ENST00000537706 CACNA1HO95180 2353 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 NRIP1P48552 1158 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 PLEKHG4Q58EX7 1191 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 SLFN13Q68D06 897 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 DHX37Q8IY37 1157 aaKnown RBP10.92□□□□□ -0.66
USP28-205ENST00000537706 CYP2W1Q8TAV3 490 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 RTP3Q9BQQ7 232 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 ANTXR1Q9H6X2 564 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 HDAC6Q9UBN7 1215 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 ZNF532Q9HCE3 1301 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 TET1Q8NFU7 2136 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 SCN10AQ9Y5Y9 1956 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 CACNA1GO43497 2377 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 THPOP40225 353 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 DMWDQ09019 674 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 DGKDQ16760 1214 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 CCDC105Q8IYK2 499 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 GPR161Q8N6U8 529 aaKnown RBP10.92□□□□□ -0.66
USP28-205ENST00000537706 GMCL1P1Q8NEA9 526 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 FLCNQ8NFG4 579 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 STAG1Q8WVM7 1258 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 P2RX5Q93086 422 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 CDCA3Q99618 268 aaPredicted RBP10.92□□□□□ -0.66
USP28-205ENST00000537706 ALG1Q9BT22 464 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 TLE6Q9H808 572 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 ARMT1Q9H993 441 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 ZNF287Q9HBT7 754 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 CCPG1Q9ULG6 757 aa10.92□□□□□ -0.66
USP28-205ENST00000537706 ADGRA3Q8IWK6 1321 aa10.91□□□□□ -0.66
USP28-205ENST00000537706 GH1P01241 217 aa10.91□□□□□ -0.66
USP28-205ENST00000537706 CENPBP07199 599 aaPredicted RBP10.91□□□□□ -0.66
USP28-205ENST00000537706 MMP3P08254 477 aa10.91□□□□□ -0.66
USP28-205ENST00000537706 PSEN2P49810 448 aa10.91□□□□□ -0.66
USP28-205ENST00000537706 BTG3Q14201 252 aaPredicted RBP10.91□□□□□ -0.66
USP28-205ENST00000537706 SUSD6Q92537 303 aa10.91□□□□□ -0.66
USP28-205ENST00000537706 CTAGE1Q96RT6 745 aa10.91□□□□□ -0.66
USP28-205ENST00000537706 CCDC8Q9H0W5 538 aaPredicted RBP10.91□□□□□ -0.66
USP28-205ENST00000537706 DBNLQ9UJU6 430 aaKnown RBP10.91□□□□□ -0.66
USP28-205ENST00000537706 CYP2D7A0A087X1C5 515 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 PTPDC1A2A3K4 754 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 BAATQ14032 418 aaPredicted RBP10.9□□□□□ -0.66
USP28-205ENST00000537706 MFSD10Q14728 455 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 TRIM71Q2Q1W2 868 aaKnown RBP10.9□□□□□ -0.66
USP28-205ENST00000537706 MUM1L1Q5H9M0 696 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 DTWD2Q8NBA8 298 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 AFG1LQ8WV93 481 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 COPS5Q92905 334 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 CLP1Q92989 425 aaKnown RBP10.9□□□□□ -0.66
USP28-205ENST00000537706 ARPP21Q9UBL0 812 aaPredicted RBP10.9□□□□□ -0.66
USP28-205ENST00000537706 NOB1Q9ULX3 412 aaKnown RBP10.9□□□□□ -0.66
USP28-205ENST00000537706 PLAGL2Q9UPG8 496 aa10.9□□□□□ -0.66
USP28-205ENST00000537706 SURF6O75683 361 aaKnown RBP10.9□□□□□ -0.67
USP28-205ENST00000537706 TTLL1O95922 423 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 MBTPS1Q14703 1052 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 PPP4R3BQ5MIZ7 849 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 TRAF7Q6Q0C0 670 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 RBM23Q86U06 439 aaKnown RBP10.9□□□□□ -0.67
USP28-205ENST00000537706 ZNF444Q8N0Y2 327 aaPredicted RBP10.9□□□□□ -0.67
USP28-205ENST00000537706 MICAL1Q8TDZ2 1067 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 MKL1Q969V6 931 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 TSHZ2Q9NRE2 1034 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 PNMA2Q9UL42 364 aa10.9□□□□□ -0.67
USP28-205ENST00000537706 PRR5-ARHGAP8B1AHC4 643 aa10.89□□□□□ -0.67
USP28-205ENST00000537706 CAND2O75155 1236 aa10.89□□□□□ -0.67
USP28-205ENST00000537706 MBD4O95243 580 aa10.89□□□□□ -0.67
USP28-205ENST00000537706 RFX1P22670 979 aa10.89□□□□□ -0.67
USP28-205ENST00000537706 SLC1A4P43007 532 aa10.89□□□□□ -0.67
USP28-205ENST00000537706 ARHGAP8P85298 464 aa10.89□□□□□ -0.67
USP28-205ENST00000537706 ADGRD2Q7Z7M1 963 aa10.89□□□□□ -0.67
USP28-205ENST00000537706 SECISBP2LQ93073 1101 aaKnown RBP10.89□□□□□ -0.67
USP28-205ENST00000537706 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.89□□□□□ -0.67
USP28-205ENST00000537706 SH2B1Q9NRF2 756 aaPredicted RBP10.89□□□□□ -0.67
USP28-205ENST00000537706 CDV3Q9UKY7 258 aaKnown RBP10.89□□□□□ -0.67
USP28-205ENST00000537706 PNMA6EA0A0J9YXQ4 647 aa10.88□□□□□ -0.67
USP28-205ENST00000537706 PRKAB2O43741 272 aa10.88□□□□□ -0.67
USP28-205ENST00000537706 BRD1O95696 1058 aa10.88□□□□□ -0.67
USP28-205ENST00000537706 AOC1P19801 751 aa10.88□□□□□ -0.67
USP28-205ENST00000537706 DNERQ8NFT8 737 aa10.88□□□□□ -0.67
USP28-205ENST00000537706 KAT2BQ92831 832 aa10.88□□□□□ -0.67
USP28-205ENST00000537706 SLC4A4Q9Y6R1 1079 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms