RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 TNFRSF8P28908 595 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 STAT6P42226 847 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 NLRP5P59047 1200 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 ZBED6P86452 979 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PRR20EP86478 221 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PRR20CP86479 221 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PRR20DP86480 221 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PRR20BP86481 221 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PRR20AP86496 221 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 CHRNDQ07001 517 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 GRIPAP1Q4V328 841 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 CC2D2BQ6DHV5 1058 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 KLHL10Q6JEL2 608 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 GBP6Q6ZN66 633 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 SRLQ86TD4 932 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 ZSCAN29Q8IWY8 852 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-233ENST00000535896 MB21D1Q8N884 522 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 TTC13Q8NBP0 860 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 TRIM58Q8NG06 486 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 SHISA4Q96DD7 197 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 ERGIC2Q96RQ1 377 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PNKPQ96T60 521 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 CRNKL1Q9BZJ0 848 aaKnown RBP7.07□□□□□ -1.28
SYNE1-233ENST00000535896 EDEM3Q9BZQ6 932 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 TTYH3Q9C0H2 523 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 TMX4Q9H1E5 349 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-233ENST00000535896 RASSF4Q9H2L5 321 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PDE11AQ9HCR9 933 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 ABCB6Q9NP58 842 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 SEC31BQ9NQW1 1179 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 TCP11L1Q9NUJ3 509 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 KBTBD4Q9NVX7 518 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 BSDC1Q9NW68 430 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-233ENST00000535896 PCDHA4Q9UN74 947 aa7.07□□□□□ -1.28
SYNE1-233ENST00000535896 ATP8B3O60423 1300 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 UBE2Q2LH0YL09 131 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 M0R2N6 131 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 PPEF1O14829 653 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-233ENST00000535896 GRIN3BO60391 1043 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 ZMYND10O75800 440 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 PLEKHA8P1O95397 391 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 FGFR1OPO95684 399 aaKnown RBP7.06□□□□□ -1.28
SYNE1-233ENST00000535896 PARP1P09874 1014 aaKnown RBP7.06□□□□□ -1.28
SYNE1-233ENST00000535896 LMAN1P49257 510 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 VSNL1P62760 191 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 AMPD3Q01432 767 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 UBXN1Q04323 297 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 HSP90AA4PQ58FG1 418 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 CNNM4Q6P4Q7 775 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 DTHD1Q6ZMT9 781 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 AMOTL1Q8IY63 956 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 BLIDQ8IZY5 108 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 C4orf32Q8N8J7 132 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 ACRBPQ8NEB7 543 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 NEK11Q8NG66 645 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 COG1Q8WTW3 980 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 ZKSCAN3Q9BRR0 538 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 EFCC1Q9HA90 598 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 EXOC1Q9NV70 894 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 RNF14Q9UBS8 474 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 BCS1LQ9Y276 419 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 PCDHB3Q9Y5E6 796 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 UTRNP46939 3433 aa7.06□□□□□ -1.28
SYNE1-233ENST00000535896 LRRC37AA6NMS7 1700 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 SLX4Q8IY92 1834 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 CCDC194A0A1B0GVG4 234 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 TTC26A0AVF1 554 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 MINDY4BA8MYZ0 360 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 MYO1CO00159 1063 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 SLC26A4O43511 780 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 USO1O60763 962 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 SHOX2O60902 331 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 PPFIA4O75335 1185 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 LCA5LO95447 670 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 CAPN2P17655 700 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 TCP1P17987 556 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 CCNE1P24864 410 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 CCT6AP40227 531 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 PRCPP42785 496 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 VAV2P52735 878 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 STX17P56962 302 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 RPS8P62241 208 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 APBA1Q02410 837 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 NNTQ13423 1086 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 MCM6Q14566 821 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 GRM4Q14833 912 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 ZNF174Q15697 407 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 GPR162Q16538 588 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 GLE1Q53GS7 698 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 EARS2Q5JPH6 523 aaKnown RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 CCDC122Q5T0U0 273 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 SPRYD7Q5W111 196 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 SPTY2D1Q68D10 685 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 TTI2Q6NXR4 508 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 PADI6Q6TGC4 694 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 PIK3AP1Q6ZUJ8 805 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 CCDC84Q86UT8 332 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-233ENST00000535896 IRF2BP1Q8IU81 584 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 ANKRD18AQ8IVF6 992 aa7.05□□□□□ -1.28
SYNE1-233ENST00000535896 MMGT1Q8N4V1 131 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms