RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 DDX41Q9UJV9 622 aaKnown RBP14.93□□□□□ -0.02
VPS28-216ENST00000533806 ELP1O95163 1332 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 A6NJR5 290 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 PFKFB2O60825 505 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 STAM2O75886 525 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 CCND2P30279 289 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 CDK7P50613 346 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 NEK4P51957 841 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 ATN1P54259 1190 aaPredicted RBP14.92□□□□□ -0.02
VPS28-216ENST00000533806 NAPAP54920 295 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 SCRN1Q12765 414 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 TTLL4Q14679 1199 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 ANKRD1Q15327 319 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 FSCN1Q16658 493 aaKnown RBP14.92□□□□□ -0.02
VPS28-216ENST00000533806 UBE2SQ16763 222 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 PCNX4Q63HM2 1172 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 XRRA1Q6P2D8 792 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 SEPT14Q6ZU15 432 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 NOL8Q76FK4 1167 aaKnown RBP14.92□□□□□ -0.02
VPS28-216ENST00000533806 SMARCC2Q8TAQ2 1214 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 COPS5Q92905 334 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 CUL5Q93034 780 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 ZMYND12Q9H0C1 365 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 AP5M1Q9H0R1 490 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 NR2E3Q9Y5X4 410 aa14.92□□□□□ -0.02
VPS28-216ENST00000533806 ESYT2A0FGR8 921 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 SMCO2A6NFE2 343 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 ADAMTS3O15072 1205 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 TGFB3P10600 412 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 MYCLP12524 364 aaPredicted RBP14.91□□□□□ -0.02
VPS28-216ENST00000533806 ICAM3P32942 547 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 ARHGAP1Q07960 439 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 LY6KQ17RY6 165 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 SLC43A3Q8NBI5 491 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 EMID1Q96A84 441 aaPredicted RBP14.91□□□□□ -0.02
VPS28-216ENST00000533806 ZFP91Q96JP5 570 aaPredicted RBP14.91□□□□□ -0.02
VPS28-216ENST00000533806 PCDHA6Q9UN73 950 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 PCDHA8Q9Y5H6 950 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 GTF3C3Q9Y5Q9 886 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 ALPK3Q96L96 1907 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 GRIN2DO15399 1336 aa14.91□□□□□ -0.02
VPS28-216ENST00000533806 SPATA31C2B4DYI2 1134 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 PPFIA3O75145 1194 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 CTDNEP1O95476 244 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 RTP1P59025 263 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 SP2Q02086 613 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 STK3Q13188 491 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 SEMA3FQ13275 785 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 ME3Q16798 604 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 KCNV1Q6PIU1 500 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 ANKRD33Q7Z3H0 272 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 C7orf61Q8IZ16 206 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 SLC26A6Q9BXS9 759 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 C22orf23Q9BZE7 217 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 GLT8D2Q9H1C3 349 aa14.9□□□□□ -0.02
VPS28-216ENST00000533806 CABYRO75952 493 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 LARGE1O95461 756 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 FOSP01100 380 aaPredicted RBP14.89□□□□□ -0.03
VPS28-216ENST00000533806 GH1P01241 217 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 CPT1AP50416 773 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 ADCY7P51828 1080 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 PURAQ00577 322 aaKnown RBP14.89□□□□□ -0.03
VPS28-216ENST00000533806 TRIM60Q495X7 471 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 CXCL17Q6UXB2 119 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 OR6J1Q8NGC5 347 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 CRYGNQ8WXF5 182 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 GLT1D1Q96MS3 346 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 TOX2Q96NM4 488 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 SLKQ9H2G2 1235 aaPredicted RBP14.89□□□□□ -0.03
VPS28-216ENST00000533806 PRO3102Q9H379 93 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 STARD7Q9NQZ5 370 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 SH3GLB2Q9NR46 395 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 MRVI1Q9Y6F6 885 aa14.89□□□□□ -0.03
VPS28-216ENST00000533806 ZEB2O60315 1214 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 HOXD8P13378 290 aaPredicted RBP14.88□□□□□ -0.03
VPS28-216ENST00000533806 ITGB5P18084 799 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 TLE2Q04725 743 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 SSRP1Q08945 709 aaKnown RBP14.88□□□□□ -0.03
VPS28-216ENST00000533806 CELF3Q5SZQ8 465 aaKnown RBP14.88□□□□□ -0.03
VPS28-216ENST00000533806 MYSM1Q5VVJ2 828 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 BCAS3Q9H6U6 928 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 TMEM260Q9NX78 707 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 RTEL1Q9NZ71 1219 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 UBIAD1Q9Y5Z9 338 aa14.88□□□□□ -0.03
VPS28-216ENST00000533806 SPDYE3A6NKU9 549 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 ARVCFO00192 962 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 CPLX1O14810 134 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 FIBPO43427 364 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 DEXIO95424 95 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 UBA1P22314 1058 aaKnown RBP14.87□□□□□ -0.03
VPS28-216ENST00000533806 SREBF1P36956 1147 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 AKAP17AQ02040 695 aaKnown RBP14.87□□□□□ -0.03
VPS28-216ENST00000533806 ST3GAL1Q11201 340 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 AP3B2Q13367 1082 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 LAMC2Q13753 1193 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 NPY5RQ15761 445 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 TRIM22Q8IYM9 498 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 FAM177A1Q8N128 213 aaPredicted RBP14.87□□□□□ -0.03
VPS28-216ENST00000533806 PPTC7Q8NI37 304 aa14.87□□□□□ -0.03
VPS28-216ENST00000533806 CCDC12Q8WUD4 166 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms