RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 GNASQ5JWF2 1037 aa22.82■■□□□ 1.24
CPSF1-209ENST00000532725 TLK2Q86UE8 772 aa22.82■■□□□ 1.24
CPSF1-209ENST00000532725 AP5M1Q9H0R1 490 aa22.82■■□□□ 1.24
CPSF1-209ENST00000532725 NKRFO15226 690 aaKnown RBP eCLIP22.81■■□□□ 1.24
CPSF1-209ENST00000532725 CCND2P30279 289 aa22.81■■□□□ 1.24
CPSF1-209ENST00000532725 ACLYP53396 1101 aa22.81■■□□□ 1.24
CPSF1-209ENST00000532725 PCSK9Q8NBP7 692 aaKnown RBP22.81■■□□□ 1.24
CPSF1-209ENST00000532725 FERMT2Q96AC1 680 aa22.81■■□□□ 1.24
CPSF1-209ENST00000532725 ZFP91Q96JP5 570 aaPredicted RBP22.81■■□□□ 1.24
CPSF1-209ENST00000532725 DDX41Q9UJV9 622 aaKnown RBP22.81■■□□□ 1.24
CPSF1-209ENST00000532725 PCDHA6Q9UN73 950 aa22.81■■□□□ 1.24
CPSF1-209ENST00000532725 PCDHA8Q9Y5H6 950 aa22.81■■□□□ 1.24
CPSF1-209ENST00000532725 MOXD2PA6NHM9 499 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 ADCY7P51828 1080 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 BEX3Q00994 111 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 LRRC26Q2I0M4 334 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 CPLX2Q6PUV4 134 aaKnown RBP22.8■■□□□ 1.24
CPSF1-209ENST00000532725 SLC39A5Q6ZMH5 540 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 TRIM22Q8IYM9 498 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 COPS5Q92905 334 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 ZMYND12Q9H0C1 365 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 GLT8D2Q9H1C3 349 aa22.8■■□□□ 1.24
CPSF1-209ENST00000532725 ESYT2A0FGR8 921 aa22.79■■□□□ 1.24
CPSF1-209ENST00000532725 LARGE1O95461 756 aa22.79■■□□□ 1.24
CPSF1-209ENST00000532725 ASGR1P07306 291 aa22.79■■□□□ 1.24
CPSF1-209ENST00000532725 CLK2P49760 499 aaKnown RBP22.79■■□□□ 1.24
CPSF1-209ENST00000532725 FSCN1Q16658 493 aaKnown RBP22.79■■□□□ 1.24
CPSF1-209ENST00000532725 LY6KQ17RY6 165 aa22.79■■□□□ 1.24
CPSF1-209ENST00000532725 PCNX4Q63HM2 1172 aa22.79■■□□□ 1.24
CPSF1-209ENST00000532725 XRRA1Q6P2D8 792 aa22.79■■□□□ 1.24
CPSF1-209ENST00000532725 DNAH12Q6ZR08 3092 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 A0A1W2PQ45 241 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-209ENST00000532725 A0A1W2PQY0 241 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 SPDYE3A6NKU9 549 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 ADAMTS3O15072 1205 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 EVI5O60447 810 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 STAM2O75886 525 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 CTDNEP1O95476 244 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 FOSP01100 380 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-209ENST00000532725 ATN1P54259 1190 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-209ENST00000532725 NECAB1Q8N987 351 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 CCDC12Q8WUD4 166 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-209ENST00000532725 BACH2Q9BYV9 841 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 UPF2Q9HAU5 1272 aaKnown RBP22.78■■□□□ 1.24
CPSF1-209ENST00000532725 SH3GLB2Q9NR46 395 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 RTEL1Q9NZ71 1219 aa22.78■■□□□ 1.24
CPSF1-209ENST00000532725 DEXIO95424 95 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 TGFB3P10600 412 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 SNX17Q15036 470 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 C1orf53Q5VUE5 145 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 KCNV1Q6PIU1 500 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 OR6J1Q8NGC5 347 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 INPP4AQ96PE3 977 aaPredicted RBP22.77■■□□□ 1.24
CPSF1-209ENST00000532725 C6orf50Q9HD87 102 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 TMEM260Q9NX78 707 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 LIMCH1Q9UPQ0 1083 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 MRVI1Q9Y6F6 885 aa22.77■■□□□ 1.24
CPSF1-209ENST00000532725 A6NJR5 290 aa22.76■■□□□ 1.23
CPSF1-209ENST00000532725 CDKL5O76039 1030 aa22.76■■□□□ 1.23
CPSF1-209ENST00000532725 ICAM3P32942 547 aa22.76■■□□□ 1.23
CPSF1-209ENST00000532725 SP2Q02086 613 aa22.76■■□□□ 1.23
CPSF1-209ENST00000532725 GTF3C6Q969F1 213 aa22.76■■□□□ 1.23
CPSF1-209ENST00000532725 VPS54Q9P1Q0 977 aa22.76■■□□□ 1.23
CPSF1-209ENST00000532725 KIAA1217Q5T5P2 1943 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 SPATA31C2B4DYI2 1134 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 ZEB2O60315 1214 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 GH1P01241 217 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 GNA11P29992 359 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 ARHGAP1Q07960 439 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 TBC1D32Q96NH3 1257 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 AIFM3Q96NN9 605 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 NR2E3Q9Y5X4 410 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 CEP290O15078 2479 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 ELP1O95163 1332 aa22.75■■□□□ 1.23
CPSF1-209ENST00000532725 DTNBO60941 627 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 CPT1AP50416 773 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 SEMA3FQ13275 785 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 AP3B2Q13367 1082 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 RABEP1Q15276 862 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 GNPTABQ3T906 1256 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 JAKMIP3Q5VZ66 844 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 CXCL17Q6UXB2 119 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 CCDC148Q8NFR7 591 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 EMID1Q96A84 441 aaPredicted RBP22.74■■□□□ 1.23
CPSF1-209ENST00000532725 PGBD1Q96JS3 809 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 GLT1D1Q96MS3 346 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 ANO3Q9BYT9 981 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 STARD7Q9NQZ5 370 aa22.74■■□□□ 1.23
CPSF1-209ENST00000532725 ALPK3Q96L96 1907 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 H0YGN5 161 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 CABYRO75952 493 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 FDPSP14324 419 aaKnown RBP22.73■■□□□ 1.23
CPSF1-209ENST00000532725 ITGB5P18084 799 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 RTP1P59025 263 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 ST3GAL1Q11201 340 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 LAMC2Q13753 1193 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 MYSM1Q5VVJ2 828 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 EHMT1Q9H9B1 1298 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 UBIAD1Q9Y5Z9 338 aa22.73■■□□□ 1.23
CPSF1-209ENST00000532725 STK36Q9NRP7 1315 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms