RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PFKFB2O60825 505 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 STAM2O75886 525 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 ARIH2O95376 493 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 TXNP10599 105 aaKnown RBP17.27■□□□□ 0.36
CPSF1-208ENST00000532560 MYCLP12524 364 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-208ENST00000532560 PTGS1P23219 599 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 RBM25P49756 843 aaKnown RBP17.27■□□□□ 0.36
CPSF1-208ENST00000532560 ADCY7P51828 1080 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 NEK4P51957 841 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 ACLYP53396 1101 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 IRX5P78411 483 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-208ENST00000532560 STK3Q13188 491 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 UBE2SQ16763 222 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 GNASQ5JWF2 1037 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 C1orf53Q5VUE5 145 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 XRRA1Q6P2D8 792 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 CPLX2Q6PUV4 134 aaKnown RBP17.27■□□□□ 0.36
CPSF1-208ENST00000532560 CCDC12Q8WUD4 166 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-208ENST00000532560 SLC26A6Q9BXS9 759 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 C22orf23Q9BZE7 217 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 NR2E3Q9Y5X4 410 aa17.27■□□□□ 0.36
CPSF1-208ENST00000532560 SPDYE3A6NKU9 549 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 RGS20O76081 388 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 ASGR1P07306 291 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 ATN1P54259 1190 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-208ENST00000532560 BEX3Q00994 111 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 SCRN1Q12765 414 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 PCNX4Q63HM2 1172 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 KCNV1Q6PIU1 500 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 SLC39A5Q6ZMH5 540 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 TRIM22Q8IYM9 498 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 OR6J1Q8NGC5 347 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 FERMT2Q96AC1 680 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 INPP4AQ96PE3 977 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-208ENST00000532560 KIF2CQ99661 725 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 ZMYND12Q9H0C1 365 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 SLKQ9H2G2 1235 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-208ENST00000532560 MRVI1Q9Y6F6 885 aa17.26■□□□□ 0.35
CPSF1-208ENST00000532560 ELP1O95163 1332 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 SMCO2A6NFE2 343 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 ZEB2O60315 1214 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 CDKL5O76039 1030 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 CPT1AP50416 773 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 RTP1P59025 263 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 MRPS9P82933 396 aaKnown RBP17.25■□□□□ 0.35
CPSF1-208ENST00000532560 SSRP1Q08945 709 aaKnown RBP17.25■□□□□ 0.35
CPSF1-208ENST00000532560 C7orf61Q8IZ16 206 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 CCDC148Q8NFR7 591 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 GLT1D1Q96MS3 346 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 EHMT1Q9H9B1 1298 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 STARD7Q9NQZ5 370 aa17.25■□□□□ 0.35
CPSF1-208ENST00000532560 DDX41Q9UJV9 622 aaKnown RBP17.25■□□□□ 0.35
CPSF1-208ENST00000532560 PPFIA3O75145 1194 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 CABYRO75952 493 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 DEXIO95424 95 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 FOSP01100 380 aaPredicted RBP17.24■□□□□ 0.35
CPSF1-208ENST00000532560 GH1P01241 217 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 TGFB3P10600 412 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 CLK2P49760 499 aaKnown RBP17.24■□□□□ 0.35
CPSF1-208ENST00000532560 AP3B2Q13367 1082 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 LY6KQ17RY6 165 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 GNPTABQ3T906 1256 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 COPS5Q92905 334 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 EMID1Q96A84 441 aaPredicted RBP17.24■□□□□ 0.35
CPSF1-208ENST00000532560 UPF2Q9HAU5 1272 aaKnown RBP17.24■□□□□ 0.35
CPSF1-208ENST00000532560 SH3GLB2Q9NR46 395 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 PCDHA6Q9UN73 950 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 PCDHA8Q9Y5H6 950 aa17.24■□□□□ 0.35
CPSF1-208ENST00000532560 STK36Q9NRP7 1315 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 A6NJR5 290 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 H0YGN5 161 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 ICAM3P32942 547 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 ARHGAP1Q07960 439 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 ME3Q16798 604 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 BRDTQ58F21 947 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-208ENST00000532560 FAM177A1Q8N128 213 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-208ENST00000532560 GTF3C6Q969F1 213 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 ANO3Q9BYT9 981 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 C6orf50Q9HD87 102 aa17.23■□□□□ 0.35
CPSF1-208ENST00000532560 A0A0U1RQG5 324 aaPredicted RBP17.22■□□□□ 0.35
CPSF1-208ENST00000532560 FIBPO43427 364 aa17.22■□□□□ 0.35
CPSF1-208ENST00000532560 LARGE1O95461 756 aa17.22■□□□□ 0.35
CPSF1-208ENST00000532560 UBA1P22314 1058 aaKnown RBP17.22■□□□□ 0.35
CPSF1-208ENST00000532560 GNA11P29992 359 aa17.22■□□□□ 0.35
CPSF1-208ENST00000532560 TRIM60Q495X7 471 aa17.22■□□□□ 0.35
CPSF1-208ENST00000532560 POLR3EQ9NVU0 708 aa17.22■□□□□ 0.35
CPSF1-208ENST00000532560 SPATA31C2B4DYI2 1134 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 MMP3P08254 477 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 SREBF1P36956 1147 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 PURAQ00577 322 aaKnown RBP17.21■□□□□ 0.35
CPSF1-208ENST00000532560 LAMC2Q13753 1193 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 MCTP2Q6DN12 878 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 CXCL17Q6UXB2 119 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 REXO1Q8N1G1 1221 aaKnown RBP17.21■□□□□ 0.35
CPSF1-208ENST00000532560 BICD2Q8TD16 824 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 GPRASP2Q96D09 838 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 ZFP91Q96JP5 570 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-208ENST00000532560 RTEL1Q9NZ71 1219 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 VPS54Q9P1Q0 977 aa17.21■□□□□ 0.35
CPSF1-208ENST00000532560 ATP11BQ9Y2G3 1177 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms