RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 DPP9Q86TI2 863 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 PLEKHM2Q8IWE5 1019 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 ACER1Q8TDN7 264 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 EVI5LQ96CN4 794 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 WNT8AQ9H1J5 351 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 OSBPL3Q9H4L5 887 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 EPB41L4AQ9HCS5 686 aaPredicted RBP10.09□□□□□ -0.79
SSBP3-212ENST00000528930 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 PKD2L1Q9P0L9 805 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 FANCMQ8IYD8 2048 aa10.09□□□□□ -0.79
SSBP3-212ENST00000528930 OTOGLQ3ZCN5 2332 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 SYNRGQ9UMZ2 1314 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 MAST4O15021 2626 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 PATL2C9JE40 543 aaKnown RBP10.08□□□□□ -0.8
SSBP3-212ENST00000528930 ARVCFO00192 962 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 TLR3O15455 904 aaKnown RBP10.08□□□□□ -0.8
SSBP3-212ENST00000528930 COBLO75128 1261 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 AKR1B1P15121 316 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 CST5P28325 142 aaPredicted RBP10.08□□□□□ -0.8
SSBP3-212ENST00000528930 ZXDAP98168 799 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 TTLL4Q14679 1199 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 SMAD2Q15796 467 aaKnown RBP10.08□□□□□ -0.8
SSBP3-212ENST00000528930 LRRFIP1Q32MZ4 808 aaKnown RBP10.08□□□□□ -0.8
SSBP3-212ENST00000528930 TREML4Q6UXN2 200 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 C16orf86Q6ZW13 317 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 SIAH1Q8IUQ4 282 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 RPUSD2Q8IZ73 545 aaKnown RBP10.08□□□□□ -0.8
SSBP3-212ENST00000528930 IFNL3Q8IZI9 196 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 PHOSPHO2Q8TCD6 241 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 ASIC4Q96FT7 647 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 C12orf42Q96LP6 360 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 HIPK3Q9H422 1215 aa10.08□□□□□ -0.8
SSBP3-212ENST00000528930 ARPP21Q9UBL0 812 aaPredicted RBP10.08□□□□□ -0.8
SSBP3-212ENST00000528930 A0A0U1RQG5 324 aaPredicted RBP10.07□□□□□ -0.8
SSBP3-212ENST00000528930 A0A1W2PRG0 241 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 FOXP2O15409 715 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 STRNO43815 780 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 PFKMP08237 780 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 GNAT2P19087 354 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 SIGLEC14Q08ET2 396 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L2Q6R6M4 530 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 TMEM179Q6ZVK1 233 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 FRMD5Q7Z6J6 570 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 HERC6Q8IVU3 1022 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 LENG1Q96BZ8 264 aaPredicted RBP10.07□□□□□ -0.8
SSBP3-212ENST00000528930 PABPC5Q96DU9 382 aaKnown RBP10.07□□□□□ -0.8
SSBP3-212ENST00000528930 DDRGK1Q96HY6 314 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 MAML3Q96JK9 1138 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 GLT1D1Q96MS3 346 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 SPSB2Q99619 263 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 NOC4LQ9BVI4 516 aaKnown RBP10.07□□□□□ -0.8
SSBP3-212ENST00000528930 KIAA1683Q9H0B3 1180 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 SUGCTQ9HAC7 445 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 BTBD7Q9P203 1132 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 MYH8P13535 1937 aa10.07□□□□□ -0.8
SSBP3-212ENST00000528930 MYO7AQ13402 2215 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 MPHOSPH10O00566 681 aaKnown RBP10.06□□□□□ -0.8
SSBP3-212ENST00000528930 KDM4AO75164 1064 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 AKR1A1P14550 325 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 USP14P54578 494 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 ZYXQ15942 572 aaKnown RBP10.06□□□□□ -0.8
SSBP3-212ENST00000528930 KCNA10Q16322 511 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 TICAM2Q86XR7 235 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 CLEC10AQ8IUN9 316 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 AMOTL1Q8IY63 956 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 CCDC17Q96LX7 622 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.06□□□□□ -0.8
SSBP3-212ENST00000528930 TSHZ2Q9NRE2 1034 aa10.06□□□□□ -0.8
SSBP3-212ENST00000528930 FLNBO75369 2602 aaKnown RBP10.05□□□□□ -0.8
SSBP3-212ENST00000528930 ZFYVE26Q68DK2 2539 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 MYADML2A6NDP7 307 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 MINDY4BA8MYZ0 360 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 APPP05067 770 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 RASA1P20936 1047 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 CCL23P55773 120 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 NBPF20Q3BBV1 942 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 KIAA1755Q5JYT7 1200 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 LCE2AQ5TA79 106 aaPredicted RBP10.05□□□□□ -0.8
SSBP3-212ENST00000528930 CATSPERGQ6ZRH7 1159 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 FAM227BQ96M60 508 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 FEZ1Q99689 392 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 HELLSQ9NRZ9 838 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 GREB1LQ9C091 1923 aaPredicted RBP10.05□□□□□ -0.8
SSBP3-212ENST00000528930 TNKSO95271 1327 aa10.05□□□□□ -0.8
SSBP3-212ENST00000528930 A0A0D9SFI3 127 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 LCHNA4D1U4 455 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L15C9J2P7 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L13C9JLJ4 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L11C9JVI0 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L18D6R9N7 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L22D6RA61 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L17D6RBQ6 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L19D6RCP7 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L20D6RJB6 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 ZNF865P0CJ78 1059 aaPredicted RBP10.04□□□□□ -0.8
SSBP3-212ENST00000528930 VCAM1P19320 739 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 TDO2P48775 406 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 ERVK-21P61565 698 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 USP17L24Q0WX57 530 aa10.04□□□□□ -0.8
SSBP3-212ENST00000528930 VPS53Q5VIR6 699 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms