RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 NTRK1P04629 796 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 DBHP09172 617 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 PDE6BP35913 854 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 SDE2Q6IQ49 451 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 MPZL3Q6UWV2 235 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 C16orf86Q6ZW13 317 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 IRF2BP1Q8IU81 584 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.96□□□□□ -1.3
CD44-230ENST00000528922 TMEM169Q96HH4 297 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 SCLYQ96I15 445 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 RXFP1Q9HBX9 757 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 CLDND1Q9NY35 253 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 KLHL14Q9P2G3 628 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 PCDHA9Q9Y5H5 950 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 PCDHA8Q9Y5H6 950 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 X6R8D5 127 aa6.96□□□□□ -1.3
CD44-230ENST00000528922 OR14I1A6ND48 311 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 H7BY64 318 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 AQP7O14520 342 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 CRTAMO95727 393 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 MPOP05164 745 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 C21orf62-AS1Q17RA5 79 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 TRMT2BQ96GJ1 504 aaKnown RBP6.95□□□□□ -1.3
CD44-230ENST00000528922 JAM3Q9BX67 310 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 TRIM39Q9HCM9 518 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 CD2APQ9Y5K6 639 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 CCDC88BA6NC98 1476 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 GOLGA3Q08378 1498 aa6.95□□□□□ -1.3
CD44-230ENST00000528922 ZC3H12DA2A288 527 aaKnown RBP6.94□□□□□ -1.3
CD44-230ENST00000528922 NUDT19A8MXV4 375 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 SRGAP3O43295 1099 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 SMARCA5O60264 1052 aaPredicted RBP6.94□□□□□ -1.3
CD44-230ENST00000528922 CYBBP04839 570 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 YBX1P67809 324 aaKnown RBP6.94□□□□□ -1.3
CD44-230ENST00000528922 GUCY1A3Q02108 690 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 RAB3GAP1Q15042 981 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 TCEA2Q15560 299 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 MLANAQ16655 118 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 KIZQ2M2Z5 673 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 FNDC3BQ53EP0 1204 aaKnown RBP6.94□□□□□ -1.3
CD44-230ENST00000528922 WWC2Q6AWC2 1192 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 PAQR3Q6TCH7 311 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 RPTNQ6XPR3 784 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 BRAPQ7Z569 592 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 FGD2Q7Z6J4 655 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 DIRC2Q96SL1 478 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 NSUN3Q9H649 340 aaKnown RBP6.94□□□□□ -1.3
CD44-230ENST00000528922 ZNF552Q9H707 407 aaPredicted RBP6.94□□□□□ -1.3
CD44-230ENST00000528922 SFMBT1Q9UHJ3 866 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 SIT1Q9Y3P8 196 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 HCFC2Q9Y5Z7 792 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 NCAPD3P42695 1498 aa6.94□□□□□ -1.3
CD44-230ENST00000528922 CEP164Q9UPV0 1460 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 LRRC10BA6NIK2 292 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 EFCAB14O75071 495 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 RASGRP1O95267 797 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 SOD2P04179 222 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 MROH9Q5TGP6 573 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 KIAA0907Q7Z7F0 614 aaPredicted RBP6.93□□□□□ -1.3
CD44-230ENST00000528922 ZNF605Q86T29 641 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 MTDHQ86UE4 582 aaKnown RBP6.93□□□□□ -1.3
CD44-230ENST00000528922 RIOX2Q8IUF8 465 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 SYNPOQ8N3V7 929 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 PCDH19Q8TAB3 1148 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 IPPKQ9H8X2 491 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 FAM53CQ9NYF3 392 aa6.93□□□□□ -1.3
CD44-230ENST00000528922 BAZ1BQ9UIG0 1483 aaKnown RBP6.92□□□□□ -1.3
CD44-230ENST00000528922 F8W031 263 aaPredicted RBP6.92□□□□□ -1.3
CD44-230ENST00000528922 ARVCFO00192 962 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 RFPL3O75679 317 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 GRK2P25098 689 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 GRK3P35626 688 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 PABPC4Q13310 644 aaKnown RBP eCLIP6.92□□□□□ -1.3
CD44-230ENST00000528922 PLEKHG4Q58EX7 1191 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 CABP7Q86V35 215 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 NETO2Q8NC67 525 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 MAGEB10Q96LZ2 347 aaPredicted RBP6.92□□□□□ -1.3
CD44-230ENST00000528922 ALG1Q9BT22 464 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 KIF21BO75037 1637 aa6.92□□□□□ -1.3
CD44-230ENST00000528922 CEP162Q5TB80 1403 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 MYOCOSA0A1B0GUC4 107 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 TCRBV16S1A1N1A0A5B0 115 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 SDSP20132 328 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 HSD3B2P26439 372 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 VIPR1P32241 457 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 PRR5P85299 388 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 RBM10P98175 930 aaKnown RBP6.91□□□□□ -1.3
CD44-230ENST00000528922 PAK1Q13153 545 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 NR1I3Q14994 352 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 FEZ1Q99689 392 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 KCNJ15Q99712 375 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 EPB41L4BQ9H329 900 aa6.91□□□□□ -1.3
CD44-230ENST00000528922 DCP1AQ9NPI6 582 aaPredicted RBP6.91□□□□□ -1.3
CD44-230ENST00000528922 COA3Q9Y2R0 106 aaPredicted RBP6.91□□□□□ -1.3
CD44-230ENST00000528922 SPATA31D1Q6ZQQ2 1576 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 FAM47E-STBD1D6RA91 191 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 WNT9AO14904 365 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 SGSM2O43147 1006 aa6.9□□□□□ -1.3
CD44-230ENST00000528922 DNAJC8O75937 253 aaPredicted RBP6.9□□□□□ -1.3
CD44-230ENST00000528922 SRGAP2CP0DJJ0 459 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms