RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 MUM1L1Q5H9M0 696 aa21.31■■□□□ 1
VPS28-207ENST00000526977 FCHSD1Q86WN1 690 aa21.31■■□□□ 1
VPS28-207ENST00000526977 BRI3BPQ8WY22 251 aa21.31■■□□□ 1
VPS28-207ENST00000526977 SMCHD1A6NHR9 2005 aa21.31■■□□□ 1
VPS28-207ENST00000526977 PRR29P0C7W0 189 aa21.31■■□□□ 1
VPS28-207ENST00000526977 SREBF1P36956 1147 aa21.31■■□□□ 1
VPS28-207ENST00000526977 SARSP49591 514 aaKnown RBP21.31■■□□□ 1
VPS28-207ENST00000526977 NT5DC1Q5TFE4 455 aa21.31■■□□□ 1
VPS28-207ENST00000526977 GRAMD1CQ8IYS0 662 aa21.31■■□□□ 1
VPS28-207ENST00000526977 CRYGNQ8WXF5 182 aa21.31■■□□□ 1
VPS28-207ENST00000526977 DHX58Q96C10 678 aa21.31■■□□□ 1
VPS28-207ENST00000526977 BTBD19C9JJ37 291 aa21.3■■□□□ 1
VPS28-207ENST00000526977 PDHXO00330 501 aa21.3■■□□□ 1
VPS28-207ENST00000526977 SLFN14P0C7P3 912 aa21.3■■□□□ 1
VPS28-207ENST00000526977 ARHGAP4P98171 946 aa21.3■■□□□ 1
VPS28-207ENST00000526977 FSTL1Q12841 308 aa21.3■■□□□ 1
VPS28-207ENST00000526977 POTEEQ6S8J3 1075 aa21.3■■□□□ 1
VPS28-207ENST00000526977 MOXD1Q6UVY6 613 aa21.3■■□□□ 1
VPS28-207ENST00000526977 RASAL3Q86YV0 1011 aa21.3■■□□□ 1
VPS28-207ENST00000526977 RIOX2Q8IUF8 465 aa21.3■■□□□ 1
VPS28-207ENST00000526977 CHST13Q8NET6 341 aa21.3■■□□□ 1
VPS28-207ENST00000526977 ACAD9Q9H845 621 aa21.3■■□□□ 1
VPS28-207ENST00000526977 BTBD7Q9P203 1132 aa21.3■■□□□ 1
VPS28-207ENST00000526977 RABGAP1Q9Y3P9 1069 aa21.3■■□□□ 1
VPS28-207ENST00000526977 TESPA1A2RU30 521 aaPredicted RBP21.29■■□□□ 1
VPS28-207ENST00000526977 TMEM88BA6NKF7 163 aa21.29■■□□□ 1
VPS28-207ENST00000526977 NEMFO60524 1076 aa21.29■■□□□ 1
VPS28-207ENST00000526977 BMP6P22004 513 aa21.29■■□□□ 1
VPS28-207ENST00000526977 RNF207Q6ZRF8 634 aa21.29■■□□□ 1
VPS28-207ENST00000526977 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.29■■□□□ 1
VPS28-207ENST00000526977 SPATC1LQ9H0A9 340 aa21.29■■□□□ 1
VPS28-207ENST00000526977 FBXO40Q9UH90 709 aa21.29■■□□□ 1
VPS28-207ENST00000526977 EDIL3O43854 480 aa21.29■■□□□ 1
VPS28-207ENST00000526977 NCAPHQ15003 741 aa21.29■■□□□ 1
VPS28-207ENST00000526977 SH3RF1Q7Z6J0 888 aa21.29■■□□□ 1
VPS28-207ENST00000526977 CCDC102AQ96A19 550 aa21.29■■□□□ 1
VPS28-207ENST00000526977 HHIPL1Q96JK4 782 aa21.29■■□□□ 1
VPS28-207ENST00000526977 TTC12Q9H892 705 aaPredicted RBP21.29■■□□□ 1
VPS28-207ENST00000526977 MAN1B1Q9UKM7 699 aa21.29■■□□□ 1
VPS28-207ENST00000526977 CYP3A7-CYP3A51PA0A087WV96 503 aa21.28■■□□□ 1
VPS28-207ENST00000526977 MANSC4A6NHS7 340 aaPredicted RBP21.28■■□□□ 1
VPS28-207ENST00000526977 ZNF500O60304 480 aaPredicted RBP21.28■■□□□ 1
VPS28-207ENST00000526977 CYP3A4P08684 503 aa21.28■■□□□ 1
VPS28-207ENST00000526977 CYP3A7P24462 503 aa21.28■■□□□ 1
VPS28-207ENST00000526977 COPB2P35606 906 aa21.28■■□□□ 1
VPS28-207ENST00000526977 PRPHP41219 470 aa21.28■■□□□ 1
VPS28-207ENST00000526977 RPS6P62753 249 aaKnown RBP21.28■■□□□ 1
VPS28-207ENST00000526977 SPATA20Q8TB22 786 aa21.28■■□□□ 1
VPS28-207ENST00000526977 TMEM60Q9H2L4 133 aa21.28■■□□□ 1
VPS28-207ENST00000526977 RBPJLQ9UBG7 517 aa21.28■■□□□ 1
VPS28-207ENST00000526977 COL11A1P12107 1806 aaPredicted RBP21.28■■□□□ 1
VPS28-207ENST00000526977 SMTNL1A8MU46 457 aa21.28■■□□□ 1
VPS28-207ENST00000526977 SLC25A27O95847 323 aa21.28■■□□□ 1
VPS28-207ENST00000526977 YY1P25490 414 aa21.28■■□□□ 1
VPS28-207ENST00000526977 LONP1P36776 959 aaKnown RBP21.28■■□□□ 1
VPS28-207ENST00000526977 SMARCE1Q969G3 411 aa21.28■■□□□ 1
VPS28-207ENST00000526977 PAGE5Q96GU1 130 aa21.28■■□□□ 1
VPS28-207ENST00000526977 ABT1Q9ULW3 272 aaKnown RBP21.28■■□□□ 1
VPS28-207ENST00000526977 GOLGA6L6A8MZA4 724 aa21.27■■□□□ 1
VPS28-207ENST00000526977 IKBKBO14920 756 aa21.27■■□□□ 1
VPS28-207ENST00000526977 CIITAP33076 1130 aa21.27■■□□□ 1
VPS28-207ENST00000526977 INHBEP58166 350 aa21.27■■□□□ 1
VPS28-207ENST00000526977 NSMFQ6X4W1 530 aa21.27■■□□□ 1
VPS28-207ENST00000526977 SYTL5Q8TDW5 730 aaPredicted RBP21.27■■□□□ 1
VPS28-207ENST00000526977 SMCR8Q8TEV9 937 aaPredicted RBP21.27■■□□□ 1
VPS28-207ENST00000526977 MRFAP1L1Q96HT8 127 aa21.27■■□□□ 1
VPS28-207ENST00000526977 PAGR1Q9BTK6 254 aa21.27■■□□□ 1
VPS28-207ENST00000526977 DDX25Q9UHL0 483 aaKnown RBP21.27■■□□□ 1
VPS28-207ENST00000526977 CNMDO75829 334 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 TDP2O95551 362 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 TPM3P06753 285 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 SLC10A3P09131 477 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 CDC25BP30305 580 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 DTHD1Q6ZMT9 781 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 DRC7Q8IY82 874 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 A0A0G2JMZ2 1700 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 OR52Z1P0C646 297 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 CYP2C8P10632 490 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 GCLCP48506 637 aaPredicted RBP21.26■□□□□ 0.99
VPS28-207ENST00000526977 MORC3Q14149 939 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 E2F4Q16254 413 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 CCDC34Q96HJ3 373 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 MBOAT7Q96N66 472 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 PTPN18Q99952 460 aa21.26■□□□□ 0.99
VPS28-207ENST00000526977 ZCCHC17Q9NP64 241 aaKnown RBP21.26■□□□□ 0.99
VPS28-207ENST00000526977 AFMP43652 599 aa21.25■□□□□ 0.99
VPS28-207ENST00000526977 BAATQ14032 418 aaPredicted RBP21.25■□□□□ 0.99
VPS28-207ENST00000526977 CALCRLQ16602 461 aa21.25■□□□□ 0.99
VPS28-207ENST00000526977 IQUBQ8NA54 791 aa21.25■□□□□ 0.99
VPS28-207ENST00000526977 PARK7Q99497 189 aaKnown RBP21.25■□□□□ 0.99
VPS28-207ENST00000526977 NRBP1Q9UHY1 535 aa21.25■□□□□ 0.99
VPS28-207ENST00000526977 TRIML1Q8N9V2 468 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 ZNF784Q8NCA9 323 aaPredicted RBP21.24■□□□□ 0.99
VPS28-207ENST00000526977 MTMR9Q96QG7 549 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 MOV10L1Q9BXT6 1211 aaKnown RBP21.24■□□□□ 0.99
VPS28-207ENST00000526977 HSD3B7Q9H2F3 369 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 TXNRD2Q9NNW7 524 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 COL20A1Q9P218 1284 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 CDC25AP30304 524 aa21.24■□□□□ 0.99
VPS28-207ENST00000526977 ZNF76P36508 570 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms