RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	MILR1	Q7Z6M3	343 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	B3GNT8	Q7Z7M8	397 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	DCP2	Q8IU60	420 aa	Known RBP	3.76	□□□□□ -1.81
CD44-216	ENST00000525293	SMARCC2	Q8TAQ2	1214 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	ZNF526	Q8TF50	670 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-216	ENST00000525293	TMEM169	Q96HH4	297 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	AP5M1	Q9H0R1	490 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	XYLT2	Q9H1B5	865 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	EPN3	Q9H201	632 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	FBXL7	Q9UJT9	491 aa		3.76	□□□□□ -1.81
CD44-216	ENST00000525293	CAPNS1	P04632	268 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	KCNC1	P48547	511 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	GTF2A2	P52657	109 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	SLURP1	P55000	103 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	HTRA3	P83110	453 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	CAP1	Q01518	475 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	KCNAB2	Q13303	367 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	LSAMP	Q13449	338 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	VWA3B	Q502W6	1294 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	ACBD5	Q5T8D3	534 aa	Predicted RBP	3.75	□□□□□ -1.81
CD44-216	ENST00000525293	MROH9	Q5TGP6	573 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	NLRP10	Q86W26	655 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	SP8	Q8IXZ3	490 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	CPA5	Q8WXQ8	436 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	KCTD13	Q8WZ19	329 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	SEC14L1	Q92503	715 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	DDX11	Q96FC9	970 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	C1orf159	Q96HA4	380 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	NOX5	Q96PH1	765 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	SYT3	Q9BQG1	590 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293	IER2	Q9BTL4	223 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293		X6R8D5	127 aa		3.75	□□□□□ -1.81
CD44-216	ENST00000525293		B8ZZF3	427 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	DLX3	O60479	287 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	EIF5B	O60841	1220 aa	Known RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	STK10	O94804	968 aa	Known RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	C8B	P07358	591 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	SLC6A11	P48066	632 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	ZC3H6	P61129	1189 aa	Known RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	MAP4K2	Q12851	820 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	SMAD4	Q13485	552 aa	Known RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	RAB33A	Q14088	237 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	HSP90AA2P	Q14568	343 aa	Predicted RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	TESK1	Q15569	626 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	NAALADL2	Q58DX5	795 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	SLC35F1	Q5T1Q4	408 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	CD300LD	Q6UXZ3	194 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	ETV3L	Q6ZN32	361 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	SAPCD2	Q86UD0	394 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	RIOX2	Q8IUF8	465 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	FAM26E	Q8N5C1	309 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	RELT	Q969Z4	430 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	ZBTB8A	Q96BR9	441 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	SPATA25	Q9BR10	227 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	TRIM55	Q9BYV6	548 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	LUC7L	Q9NQ29	371 aa	Known RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	CLDND1	Q9NY35	253 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	PPP1R1B	Q9UD71	204 aa	Predicted RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	PALD1	Q9ULE6	856 aa		3.74	□□□□□ -1.81
CD44-216	ENST00000525293	COA3	Q9Y2R0	106 aa	Predicted RBP	3.74	□□□□□ -1.81
CD44-216	ENST00000525293	SH3D21	A4FU49	640 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	FOXD2	O60548	495 aa	Predicted RBP	3.73	□□□□□ -1.81
CD44-216	ENST00000525293	CYP2C8	P10632	490 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	RANGAP1	P46060	587 aa	Predicted RBP	3.73	□□□□□ -1.81
CD44-216	ENST00000525293	DLX2	Q07687	328 aa	Predicted RBP	3.73	□□□□□ -1.81
CD44-216	ENST00000525293	NFIX	Q14938	502 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	LIPI	Q6XZB0	460 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	USP53	Q70EK8	1073 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	STK32C	Q86UX6	486 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	CKAP2L	Q8IYA6	745 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293		Q8N1Y9	231 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	SGSM3	Q96HU1	749 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	GORASP1	Q9BQQ3	440 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	TANGO6	Q9C0B7	1094 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	ADAM7	Q9H2U9	754 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	SPATA6	Q9NWH7	488 aa	Predicted RBP	3.73	□□□□□ -1.81
CD44-216	ENST00000525293	NPFFR2	Q9Y5X5	522 aa		3.73	□□□□□ -1.81
CD44-216	ENST00000525293	IQCA1L	A6NCM1	817 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293		H7BY64	318 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	PRRG2	O14669	202 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	HGS	O14964	777 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-216	ENST00000525293	U2SURP	O15042	1029 aa	Known RBP	3.72	□□□□□ -1.81
CD44-216	ENST00000525293	PRODH	O43272	600 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	SMARCA5	O60264	1052 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-216	ENST00000525293	MSC	O60682	206 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	STAT5A	P42229	794 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	NT5DC1	Q5TFE4	455 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	STEAP3	Q658P3	488 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	TTLL7	Q6ZT98	887 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	MIB1	Q86YT6	1006 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	CARF	Q8N187	725 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	LINC00482	Q8N8I6	264 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	ST13P5	Q8NFI4	369 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-216	ENST00000525293	YIPF4	Q9BSR8	244 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	AARSD1	Q9BTE6	412 aa	Known RBP	3.72	□□□□□ -1.81
CD44-216	ENST00000525293	C11orf84	Q9BUA3	381 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-216	ENST00000525293	PHF20	Q9BVI0	1012 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	JAM3	Q9BX67	310 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	ARHGEF4	Q9NR80	690 aa		3.72	□□□□□ -1.81
CD44-216	ENST00000525293	GPR27	Q9NS67	375 aa		3.72	□□□□□ -1.81

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