RNA–Protein interactions for RNA: ENST00000525141.1

SMCO4-202, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SMCO4, Length 889 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-202ENST00000525141 BCAS3Q9H6U6 928 aa14.54□□□□□ -0.08
SMCO4-202ENST00000525141 TRMT13Q9NUP7 481 aaKnown RBP14.54□□□□□ -0.08
SMCO4-202ENST00000525141 POLR3EQ9NVU0 708 aa14.54□□□□□ -0.08
SMCO4-202ENST00000525141 MAP3K20Q9NYL2 800 aaKnown RBP14.54□□□□□ -0.08
SMCO4-202ENST00000525141 GTF3C3Q9Y5Q9 886 aa14.54□□□□□ -0.08
SMCO4-202ENST00000525141 KIAA1217Q5T5P2 1943 aa14.54□□□□□ -0.08
SMCO4-202ENST00000525141 SCN10AQ9Y5Y9 1956 aa14.54□□□□□ -0.08
SMCO4-202ENST00000525141 MYH7BA7E2Y1 1941 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 GRXCR1A8MXD5 290 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 B4DLN1 442 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 CYP2C9P11712 490 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 CPT1AP50416 773 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 MRPL12P52815 198 aaKnown RBP14.53□□□□□ -0.08
SMCO4-202ENST00000525141 CCL23P55773 120 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 EXOSC10Q01780 885 aaKnown RBP14.53□□□□□ -0.08
SMCO4-202ENST00000525141 SP2Q02086 613 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 CATIPQ7Z7H3 387 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 RASEFQ8IZ41 740 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 ZNF654Q8IZM8 581 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 CMTR1Q8N1G2 835 aaKnown RBP14.53□□□□□ -0.08
SMCO4-202ENST00000525141 SAMD3Q8N6K7 520 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 PIBF1Q8WXW3 757 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 GPKOWQ92917 476 aaPredicted RBP eCLIP14.53□□□□□ -0.08
SMCO4-202ENST00000525141 KCNB2Q92953 911 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 RNPC3Q96LT9 517 aaKnown RBP14.53□□□□□ -0.08
SMCO4-202ENST00000525141 CTAGE1Q96RT6 745 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 MPHOSPH6Q99547 160 aaKnown RBP14.53□□□□□ -0.08
SMCO4-202ENST00000525141 LRRC2Q9BYS8 371 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 STXBP5LQ9Y2K9 1186 aa14.53□□□□□ -0.08
SMCO4-202ENST00000525141 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.52□□□□□ -0.09
SMCO4-202ENST00000525141 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.52□□□□□ -0.09
SMCO4-202ENST00000525141 SMARCA1P28370 1054 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 MCM5P33992 734 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 HSPA4P34932 840 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 PPIGQ13427 754 aaKnown RBP eCLIP14.52□□□□□ -0.09
SMCO4-202ENST00000525141 KRT32Q14532 448 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 SART3Q15020 963 aaKnown RBP14.52□□□□□ -0.09
SMCO4-202ENST00000525141 PGM5Q15124 567 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 TMEM199Q8N511 208 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 USP26Q9BXU7 913 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 HIPK3Q9H422 1215 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 IL23AQ9NPF7 189 aa14.52□□□□□ -0.09
SMCO4-202ENST00000525141 CXXC1Q9P0U4 656 aaPredicted RBP14.52□□□□□ -0.09
SMCO4-202ENST00000525141 GCOM1H8Y6P7 765 aaPredicted RBP14.51□□□□□ -0.09
SMCO4-202ENST00000525141 KPNA6O60684 536 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 PLEKHA8P1O95397 391 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 GH1P01241 217 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 MMP3P08254 477 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 POLR2MP0CAP2 368 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 MYCLP12524 364 aaPredicted RBP14.51□□□□□ -0.09
SMCO4-202ENST00000525141 RXRAP19793 462 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 LIFRP42702 1097 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 MRPS9P82933 396 aaKnown RBP14.51□□□□□ -0.09
SMCO4-202ENST00000525141 FCHSD1Q86WN1 690 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 RAB11FIP4Q86YS3 637 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 TMTC2Q8N394 836 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 SCLYQ96I15 445 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 TMEM87BQ96K49 555 aa14.51□□□□□ -0.09
SMCO4-202ENST00000525141 CDX2Q99626 313 aaPredicted RBP14.51□□□□□ -0.09
SMCO4-202ENST00000525141 PITPNM1O00562 1244 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 MEIS2O14770 477 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 DDAH1O94760 285 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 FGBP02675 491 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 PBX2P40425 430 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 GPNMBQ14956 572 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 ADCK5Q3MIX3 580 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 MYSM1Q5VVJ2 828 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 NFRKBQ6P4R8 1299 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 HERVK_113Q902F9 699 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 EMID1Q96A84 441 aaPredicted RBP14.5□□□□□ -0.09
SMCO4-202ENST00000525141 NEK1Q96PY6 1258 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 SPZ1Q9BXG8 430 aa14.5□□□□□ -0.09
SMCO4-202ENST00000525141 TRIP12Q14669 1992 aaPredicted RBP14.49□□□□□ -0.09
SMCO4-202ENST00000525141 hCG_1642624A0A1W2PR95 340 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 HMGB1P09429 215 aaKnown RBP14.49□□□□□ -0.09
SMCO4-202ENST00000525141 SEMA3FQ13275 785 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 HIC1Q14526 733 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 USP17L6PQ6QN14 398 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 PIP4P2Q8N4L2 257 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 FANCBQ8NB91 859 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 BRPF3Q9ULD4 1205 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 TELO2Q9Y4R8 837 aa14.49□□□□□ -0.09
SMCO4-202ENST00000525141 HAS3O00219 553 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 SORBS3O60504 671 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 SUPT20HL2P0C7V6 817 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 HOXD8P13378 290 aaPredicted RBP14.48□□□□□ -0.09
SMCO4-202ENST00000525141 PTPN11Q06124 597 aaPredicted RBP14.48□□□□□ -0.09
SMCO4-202ENST00000525141 LAMC2Q13753 1193 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 GRIN2CQ14957 1233 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 HSDL1Q3SXM5 330 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 BRDTQ58F21 947 aaPredicted RBP14.48□□□□□ -0.09
SMCO4-202ENST00000525141 CELF3Q5SZQ8 465 aaKnown RBP14.48□□□□□ -0.09
SMCO4-202ENST00000525141 ZNF697Q5TEC3 545 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 GDF6Q6KF10 455 aaPredicted RBP14.48□□□□□ -0.09
SMCO4-202ENST00000525141 SGMS1Q86VZ5 419 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 DHX37Q8IY37 1157 aaKnown RBP14.48□□□□□ -0.09
SMCO4-202ENST00000525141 SLC17A8Q8NDX2 589 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 CTCFLQ8NI51 663 aaPredicted RBP14.48□□□□□ -0.09
SMCO4-202ENST00000525141 TCEANC2Q96MN5 208 aa14.48□□□□□ -0.09
SMCO4-202ENST00000525141 RTEL1Q9NZ71 1219 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms