RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PLCD1P51178 756 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GYS2P54840 703 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLURP1P55000 103 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 INHBCP55103 352 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TBX4P57082 545 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RHBDL3P58872 404 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RAC3P60763 192 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP2CBP62714 309 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPL11P62913 178 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RACK1P63244 317 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP2CAP67775 309 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 BLOC1S1P78537 153 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 AMPD3Q01432 767 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TEKQ02763 1124 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TAP1Q03518 808 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CACNB2Q08289 660 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCNAB2Q13303 367 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GRB10Q13322 594 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SERINC3Q13530 473 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CAMK2GQ13555 558 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 AUHQ13825 339 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CNGB1Q14028 1251 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RAB33AQ14088 237 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 UBE4AQ14139 1066 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 NCAPHQ15003 741 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZRSR2Q15696 482 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAP3K11Q16584 847 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SMN1Q16637 294 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GAB4Q2WGN9 574 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RGL3Q3MIN7 710 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HSF5Q4G112 596 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 C4orf46Q504U0 113 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF394Q53GI3 561 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANKRD39Q53RE8 183 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TNNI3KQ59H18 835 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ODR4Q5SWX8 454 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 AXDND1Q5T1B0 1012 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 STRIP1Q5VSL9 837 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KIAA1614Q5VZ46 1190 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 USPL1Q5W0Q7 1092 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 E4F1Q66K89 784 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HGSNATQ68CP4 663 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLFN13Q68D06 897 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 VASNQ6EMK4 673 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRTAP5-11Q6L8G4 156 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CYP4F22Q6NT55 531 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM180AQ6UWF9 173 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HHIPL2Q6UWX4 724 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CD300LDQ6UXZ3 194 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAMTSL4Q6UY14 1074 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 LIPIQ6XZB0 460 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM196AQ6ZSG2 479 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CAPN12Q6ZSI9 719 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 NLRC3Q7RTR2 1065 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 REC114Q7Z4M0 266 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KIAA0907Q7Z7F0 614 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SAPCD2Q86UD0 394 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FERMT3Q86UX7 667 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HOMER1Q86YM7 354 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FMNL3Q8IVF7 1028 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 REXO1L1PQ8IX06 675 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC146Q8IYE0 955 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 C7orf61Q8IZ16 206 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPUSD2Q8IZ73 545 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 NLGN4XQ8N0W4 816 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CARFQ8N187 725 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANKRD35Q8N283 1001 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SYNPOQ8N3V7 929 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 NME8Q8N427 588 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KLHL36Q8N4N3 616 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TAB3Q8N5C8 712 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SAMD3Q8N6K7 520 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GPATCH11Q8N954 259 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRPF38AQ8NAV1 312 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KYQ8NBH2 561 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GOLM1Q8NBJ4 401 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SH3TC2Q8TF17 1288 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBXO41Q8TF61 875 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 STAG1Q8WVM7 1258 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 JDP2Q8WYK2 163 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC9A6Q92581 669 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 LPPQ93052 612 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 NKD1Q969G9 470 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZBTB8AQ96BR9 441 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GPRASP2Q96D09 838 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TRMT2BQ96GJ1 504 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CHAMP1Q96JM3 812 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RNPC3Q96LT9 517 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FEZ1Q99689 392 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 NAP1L4Q99733 375 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SENP7Q9BQF6 1050 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLCD4Q9BRC7 762 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 C1QTNF3Q9BXJ4 246 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HDAC8Q9BY41 377 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TRIM55Q9BYV6 548 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FOXP3Q9BZS1 431 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC113Q9H0I3 377 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF700Q9H0M5 742 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 VPS33BQ9H267 617 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 VPS11Q9H270 941 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms