RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 C17orf80Q9BSJ5 609 aa23.89■■□□□ 1.41
SQSTM1-215ENST00000514093 ALG1Q9BT22 464 aa23.89■■□□□ 1.41
SQSTM1-215ENST00000514093 B4DLN1 442 aa23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 GH1P01241 217 aa23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 FGRP09769 529 aa23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 MRPL12P52815 198 aaKnown RBP23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 ZNF543Q08ER8 600 aa23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 CPVLQ9H3G5 476 aa23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 GTF2IRD1Q9UHL9 959 aa23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 RCAN3Q9UKA8 241 aa23.88■■□□□ 1.41
SQSTM1-215ENST00000514093 GOLGA8HP0CJ92 632 aa23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 CASTP20810 708 aaKnown RBP23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 IKBKEQ14164 716 aa23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 PTCRAQ6ISU1 281 aaPredicted RBP23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 C7orf31Q8N865 590 aa23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 WNT8BQ93098 351 aa23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 TAAR1Q96RJ0 339 aa23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 PNMA2Q9UL42 364 aa23.87■■□□□ 1.41
SQSTM1-215ENST00000514093 WDR19Q8NEZ3 1342 aa23.86■■□□□ 1.41
SQSTM1-215ENST00000514093 ZNF200P98182 395 aaPredicted RBP23.86■■□□□ 1.41
SQSTM1-215ENST00000514093 RBL2Q08999 1139 aa23.86■■□□□ 1.41
SQSTM1-215ENST00000514093 ZNF618Q5T7W0 954 aa23.86■■□□□ 1.41
SQSTM1-215ENST00000514093 TRAF7Q6Q0C0 670 aa23.86■■□□□ 1.41
SQSTM1-215ENST00000514093 UBA5Q9GZZ9 404 aa23.86■■□□□ 1.41
SQSTM1-215ENST00000514093 TCP11L1Q9NUJ3 509 aa23.86■■□□□ 1.41
SQSTM1-215ENST00000514093 H3BQ06 376 aaPredicted RBP23.85■■□□□ 1.41
SQSTM1-215ENST00000514093 PARNO95453 639 aaKnown RBP23.85■■□□□ 1.41
SQSTM1-215ENST00000514093 PSEN2P49810 448 aa23.85■■□□□ 1.41
SQSTM1-215ENST00000514093 MBTPS1Q14703 1052 aa23.85■■□□□ 1.41
SQSTM1-215ENST00000514093 FBXO22Q8NEZ5 403 aa23.85■■□□□ 1.41
SQSTM1-215ENST00000514093 COL20A1Q9P218 1284 aa23.85■■□□□ 1.41
SQSTM1-215ENST00000514093 SIP14410 1827 aa23.84■■□□□ 1.41
SQSTM1-215ENST00000514093 FGAP02671 866 aa23.84■■□□□ 1.41
SQSTM1-215ENST00000514093 ZNF286BP0CG31 522 aa23.84■■□□□ 1.41
SQSTM1-215ENST00000514093 DGKDQ16760 1214 aa23.84■■□□□ 1.41
SQSTM1-215ENST00000514093 RGS22Q8NE09 1264 aa23.84■■□□□ 1.41
SQSTM1-215ENST00000514093 SYTL5Q8TDW5 730 aaPredicted RBP23.84■■□□□ 1.41
SQSTM1-215ENST00000514093 PIEZO1Q92508 2521 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 GRXCR2A6NFK2 248 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 SNHG28P0DPA3 235 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 HAND2P61296 217 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 PTK7Q13308 1070 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 MFSD10Q14728 455 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 ALX1Q15699 326 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 CSPP1Q1MSJ5 1256 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 KIAA0753Q2KHM9 967 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 TRIM71Q2Q1W2 868 aaKnown RBP23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 DDX41Q9UJV9 622 aaKnown RBP23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 INSL6Q9Y581 213 aa23.83■■□□□ 1.41
SQSTM1-215ENST00000514093 EFCAB14O75071 495 aa23.82■■□□□ 1.4
SQSTM1-215ENST00000514093 ALADP13716 330 aa23.82■■□□□ 1.4
SQSTM1-215ENST00000514093 MX1P20591 662 aa23.82■■□□□ 1.4
SQSTM1-215ENST00000514093 HIC1Q14526 733 aa23.82■■□□□ 1.4
SQSTM1-215ENST00000514093 STXBP2Q15833 593 aa23.82■■□□□ 1.4
SQSTM1-215ENST00000514093 MYOCDQ8IZQ8 938 aa23.82■■□□□ 1.4
SQSTM1-215ENST00000514093 NSUN6Q8TEA1 469 aaKnown RBP23.82■■□□□ 1.4
SQSTM1-215ENST00000514093 SORBS3O60504 671 aa23.81■■□□□ 1.4
SQSTM1-215ENST00000514093 LGR5O75473 907 aa23.81■■□□□ 1.4
SQSTM1-215ENST00000514093 EP400NLQ6ZTU2 488 aa23.81■■□□□ 1.4
SQSTM1-215ENST00000514093 DBF4BQ8NFT6 615 aa23.81■■□□□ 1.4
SQSTM1-215ENST00000514093 MRPL38Q96DV4 380 aaKnown RBP23.81■■□□□ 1.4
SQSTM1-215ENST00000514093 RMDN3Q96TC7 470 aa23.81■■□□□ 1.4
SQSTM1-215ENST00000514093 ZKSCAN3Q9BRR0 538 aa23.81■■□□□ 1.4
SQSTM1-215ENST00000514093 EIF2AK2P19525 551 aaKnown RBP23.8■■□□□ 1.4
SQSTM1-215ENST00000514093 MRE11P49959 708 aa23.8■■□□□ 1.4
SQSTM1-215ENST00000514093 CDC37Q16543 378 aaPredicted RBP23.8■■□□□ 1.4
SQSTM1-215ENST00000514093 NEK9Q8TD19 979 aa23.8■■□□□ 1.4
SQSTM1-215ENST00000514093 FAM227BQ96M60 508 aa23.8■■□□□ 1.4
SQSTM1-215ENST00000514093 TTC14Q96N46 770 aa23.8■■□□□ 1.4
SQSTM1-215ENST00000514093 KATNAL1Q9BW62 490 aa23.8■■□□□ 1.4
SQSTM1-215ENST00000514093 HAS3O00219 553 aa23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 F2P00734 622 aa23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 AMHP03971 560 aa23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 EPC2Q52LR7 807 aa23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 ARHGEF16Q5VV41 709 aa23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 DHX37Q8IY37 1157 aaKnown RBP23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 HELLSQ9NRZ9 838 aa23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 MRVI1Q9Y6F6 885 aa23.79■■□□□ 1.4
SQSTM1-215ENST00000514093 THPOP40225 353 aa23.78■■□□□ 1.4
SQSTM1-215ENST00000514093 HTRA4P83105 476 aaPredicted RBP23.78■■□□□ 1.4
SQSTM1-215ENST00000514093 LAMC2Q13753 1193 aa23.78■■□□□ 1.4
SQSTM1-215ENST00000514093 GPATCH4Q5T3I0 446 aaKnown RBP23.78■■□□□ 1.4
SQSTM1-215ENST00000514093 IWS1Q96ST2 819 aa23.78■■□□□ 1.4
SQSTM1-215ENST00000514093 CTNNA3Q9UI47 895 aa23.78■■□□□ 1.4
SQSTM1-215ENST00000514093 ABCB11O95342 1321 aa23.78■■□□□ 1.4
SQSTM1-215ENST00000514093 KIAA1217Q5T5P2 1943 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 A0A0D9SFI3 127 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 DCXO43602 365 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 HSPD1P10809 573 aaKnown RBP23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 MKRN4PQ13434 485 aaPredicted RBP23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 GPM6BQ13491 265 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 PTPROQ16827 1216 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 PUS10Q3MIT2 529 aaKnown RBP23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 TCEAL5Q5H9L2 206 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 MFSD6Q6ZSS7 791 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 ADGRF4Q8IZF3 695 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 BANK1Q8NDB2 785 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 PPTC7Q8NI37 304 aa23.77■■□□□ 1.4
SQSTM1-215ENST00000514093 SP7Q8TDD2 431 aaPredicted RBP23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms