RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 FOXR2Q6PJQ5 311 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 SV2BQ7L1I2 683 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 NIPA1Q7RTP0 329 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 DNAJC5GQ8N7S2 189 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 GIMAP8Q8ND71 665 aaPredicted RBP9.4□□□□□ -0.9
RNF4-220ENST00000513578 RASSF8Q8NHQ8 419 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.4□□□□□ -0.9
RNF4-220ENST00000513578 LRRC15Q8TF66 581 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 RAD54LQ92698 747 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 L3MBTL3Q96JM7 780 aaPredicted RBP9.4□□□□□ -0.9
RNF4-220ENST00000513578 TRIM9Q9C026 710 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 PICK1Q9NRD5 415 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 FANCLQ9NW38 375 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 GGA3Q9NZ52 723 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 RWDD2AQ9UIY3 292 aa9.4□□□□□ -0.9
RNF4-220ENST00000513578 A0A0G2JMZ2 1700 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 ATP2A1O14983 1001 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 MARCH6O60337 910 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 ZBED4O75132 1171 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 USP2O75604 605 aaPredicted RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 BCRP11274 1271 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 CD44P16070 742 aaKnown RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 VCAM1P19320 739 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 PSMD2Q13200 908 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 KMT5BQ4FZB7 885 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 CDKAL1Q5VV42 579 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 HAUS3Q68CZ6 603 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 CCDC174Q6PII3 467 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 CCDC186Q7Z3E2 898 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 DRC7Q8IY82 874 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 ADSSL1Q8N142 457 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 RBM46Q8TBY0 533 aaKnown RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 SNX29Q8TEQ0 813 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 ZC3H15Q8WU90 426 aaKnown RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 CLEC4DQ8WXI8 215 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 LARP4BQ92615 738 aaKnown RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 DHTKD1Q96HY7 919 aaPredicted RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 CDK5RAP3Q96JB5 506 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 WRNIP1Q96S55 665 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 XPO4Q9C0E2 1151 aaKnown RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 BLZF1Q9H2G9 400 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 FBXO28Q9NVF7 368 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 IFNKQ9P0W0 207 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.39□□□□□ -0.91
RNF4-220ENST00000513578 NFE2L3Q9Y4A8 694 aa9.39□□□□□ -0.91
RNF4-220ENST00000513578 SYNRGQ9UMZ2 1314 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 POTEMA6NI47 508 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 LRRC10BA6NIK2 292 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 FAM86B1E9PN63 330 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 MEIS1O00470 390 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 MSH4O15457 936 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 DDNO94850 711 aaPredicted RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 CFBP00751 764 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 FAM86B2P0C5J1 330 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 RPA1P27694 616 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 CASP1P29466 404 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 UBASH3AP57075 661 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 SETQ01105 290 aaPredicted RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 SPAG1Q07617 926 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 EHHADHQ08426 723 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 SPP2Q13103 211 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 PAK1Q13153 545 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 STIM1Q13586 685 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 MTMR2Q13614 643 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 ZYXQ15942 572 aaKnown RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 TKFCQ3LXA3 575 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 USP50Q70EL3 339 aaPredicted RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 UNC13DQ70J99 1090 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 CCDC84Q86UT8 332 aaPredicted RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 REPS2Q8NFH8 660 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 ERMNQ8TAM6 284 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 NOC3LQ8WTT2 800 aaKnown RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 STAMQ92783 540 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 SLC5A5Q92911 643 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 CTAGE1Q96RT6 745 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 NUDT12Q9BQG2 462 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 POLR3CQ9BUI4 534 aaPredicted RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 RPAP3Q9H6T3 665 aaPredicted RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 RNF181Q9P0P0 153 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 VAV3Q9UKW4 847 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 CCPG1Q9ULG6 757 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 SCAF8Q9UPN6 1271 aaKnown RBP9.38□□□□□ -0.91
RNF4-220ENST00000513578 AFG3L2Q9Y4W6 797 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 WDR81Q562E7 1941 aa9.38□□□□□ -0.91
RNF4-220ENST00000513578 A0A1B0GTH6 734 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 VWA5AO00534 786 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 ATP1A3P13637 1013 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 YBX3P16989 372 aaKnown RBP eCLIP9.37□□□□□ -0.91
RNF4-220ENST00000513578 PTGS1P23219 599 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 HOXA13P31271 388 aaPredicted RBP9.37□□□□□ -0.91
RNF4-220ENST00000513578 ZNF76P36508 570 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 PRCPP42785 496 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 MAP3K9P80192 1104 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 PPP2R5CQ13362 524 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 NR1I3Q14994 352 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 CCDC144BQ3MJ40 725 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 CEP55Q53EZ4 464 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 PRR16Q569H4 304 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 C9orf131Q5VYM1 1079 aa9.37□□□□□ -0.91
RNF4-220ENST00000513578 XRRA1Q6P2D8 792 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms