RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 PABPC5Q96DU9 382 aaKnown RBP12.92□□□□□ -0.34
DDX41-216ENST00000513562 SEC62Q99442 399 aaKnown RBP12.92□□□□□ -0.34
DDX41-216ENST00000513562 MTMR7Q9Y216 660 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 FAM50BQ9Y247 325 aa12.92□□□□□ -0.34
DDX41-216ENST00000513562 HTRA4P83105 476 aaPredicted RBP12.91□□□□□ -0.34
DDX41-216ENST00000513562 ARHGAP1Q07960 439 aa12.91□□□□□ -0.34
DDX41-216ENST00000513562 PTK7Q13308 1070 aa12.91□□□□□ -0.34
DDX41-216ENST00000513562 TRIM71Q2Q1W2 868 aaKnown RBP12.91□□□□□ -0.34
DDX41-216ENST00000513562 TSHZ3Q63HK5 1081 aa12.91□□□□□ -0.34
DDX41-216ENST00000513562 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.91□□□□□ -0.34
DDX41-216ENST00000513562 ADHFE1Q8IWW8 467 aa12.91□□□□□ -0.34
DDX41-216ENST00000513562 BANK1Q8NDB2 785 aa12.91□□□□□ -0.34
DDX41-216ENST00000513562 SAMD11Q96NU1 681 aa12.91□□□□□ -0.34
DDX41-216ENST00000513562 USP34Q70CQ2 3546 aa12.91□□□□□ -0.34
DDX41-216ENST00000513562 WDR19Q8NEZ3 1342 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 B4DLN1 442 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 FOXP2O15409 715 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 LGR5O75473 907 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 GH1P01241 217 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 CASTP20810 708 aaKnown RBP12.9□□□□□ -0.34
DDX41-216ENST00000513562 MRPL12P52815 198 aaKnown RBP12.9□□□□□ -0.34
DDX41-216ENST00000513562 EPC2Q52LR7 807 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 TCEAL5Q5H9L2 206 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 ZNF618Q5T7W0 954 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 C7orf31Q8N865 590 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 ANKS1AQ92625 1134 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 WNT8BQ93098 351 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 GPATCH3Q96I76 525 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 MFSD14AQ96MC6 490 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 INCENPQ9NQS7 918 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 HDAC6Q9UBN7 1215 aa12.9□□□□□ -0.34
DDX41-216ENST00000513562 FRMPD2Q68DX3 1309 aaPredicted RBP12.89□□□□□ -0.35
DDX41-216ENST00000513562 TET1Q8NFU7 2136 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 BRWD1Q9NSI6 2320 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 H3BNC9 293 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 RBAK-RBAKDNI3L0D1 243 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 F2P00734 622 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 AMHP03971 560 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 IRS1P35568 1242 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 CTDSPL2Q05D32 466 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 DGKDQ16760 1214 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 LY6KQ17RY6 165 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 MYOCDQ8IZQ8 938 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 RGS22Q8NE09 1264 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 KATNAL1Q9BW62 490 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 UPF3BQ9BZI7 483 aaKnown RBP12.89□□□□□ -0.35
DDX41-216ENST00000513562 NSUN3Q9H649 340 aaKnown RBP12.89□□□□□ -0.35
DDX41-216ENST00000513562 COL4A6Q14031 1691 aa12.89□□□□□ -0.35
DDX41-216ENST00000513562 EMSYQ7Z589 1322 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 HAS3O00219 553 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 ORC4O43929 436 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 RANBP6O60518 1105 aaKnown RBP12.88□□□□□ -0.35
DDX41-216ENST00000513562 PDHBP11177 359 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 TOP1P11387 765 aaKnown RBP12.88□□□□□ -0.35
DDX41-216ENST00000513562 PSEN2P49810 448 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 MFSD10Q14728 455 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 ZMYM1Q5SVZ6 1142 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 DBF4BQ8NFT6 615 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 EMID1Q96A84 441 aaPredicted RBP12.88□□□□□ -0.35
DDX41-216ENST00000513562 PHOX2BQ99453 314 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 TMEM47Q9BQJ4 181 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 CHMP4BQ9H444 224 aaKnown RBP12.88□□□□□ -0.35
DDX41-216ENST00000513562 GPCPD1Q9NPB8 672 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 ANAPC4Q9UJX5 808 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 SIP14410 1827 aa12.88□□□□□ -0.35
DDX41-216ENST00000513562 FGRP09769 529 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 LTBRP36941 435 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 ZNF543Q08ER8 600 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 GPM6BQ13491 265 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 SMAD2Q15796 467 aaKnown RBP12.87□□□□□ -0.35
DDX41-216ENST00000513562 KIAA0753Q2KHM9 967 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 PLEKHG4Q58EX7 1191 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 HERC4Q5GLZ8 1057 aaPredicted RBP12.87□□□□□ -0.35
DDX41-216ENST00000513562 SEPT14Q6ZU15 432 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 CHST3Q7LGC8 479 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 FBXO11Q86XK2 927 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 POP1Q99575 1024 aaKnown RBP12.87□□□□□ -0.35
DDX41-216ENST00000513562 ALG1Q9BT22 464 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 CLDND1Q9NY35 253 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 MUTYHQ9UIF7 546 aa12.87□□□□□ -0.35
DDX41-216ENST00000513562 NCK2O43639 380 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 ZNF286BP0CG31 522 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 SNHG28P0DPA3 235 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 HOXD8P13378 290 aaPredicted RBP12.86□□□□□ -0.35
DDX41-216ENST00000513562 ZNF200P98182 395 aaPredicted RBP12.86□□□□□ -0.35
DDX41-216ENST00000513562 HIC1Q14526 733 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 CTC1Q2NKJ3 1217 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 EP400NLQ6ZTU2 488 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 RPAINQ86UA6 219 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 TMEM192Q8IY95 271 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 PRSS33Q8NF86 280 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 PPTC7Q8NI37 304 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 NSUN6Q8TEA1 469 aaKnown RBP12.86□□□□□ -0.35
DDX41-216ENST00000513562 TOP1MTQ969P6 601 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 YME1L1Q96TA2 773 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 MAF1Q9H063 256 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 TCP11L1Q9NUJ3 509 aa12.86□□□□□ -0.35
DDX41-216ENST00000513562 DDX41Q9UJV9 622 aaKnown RBP12.86□□□□□ -0.35
DDX41-216ENST00000513562 TRIOO75962 3097 aa12.85□□□□□ -0.35
DDX41-216ENST00000513562 RSPH10B2B2RC85 870 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms