RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 CCDC171Q6TFL3 1326 aa11.32□□□□□ -0.6
TCOF1-212ENST00000513538 CXCL10P02778 98 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 RBL2Q08999 1139 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 HIC1Q14526 733 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 MBTPS1Q14703 1052 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 TRIM71Q2Q1W2 868 aaKnown RBP11.31□□□□□ -0.6
TCOF1-212ENST00000513538 LRRC8DQ7L1W4 858 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 RGS22Q8NE09 1264 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 CAGE1Q8TC20 777 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 CD320Q9NPF0 282 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 C11orf16Q9NQ32 467 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 PNMA2Q9UL42 364 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 NOD1Q9Y239 953 aa11.31□□□□□ -0.6
TCOF1-212ENST00000513538 GH1P01241 217 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 ZNF286BP0CG31 522 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 CKBP12277 381 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 SELPP16109 830 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 MFSD6Q6ZSS7 791 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 CHST3Q7LGC8 479 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 HLA-CQ95604 372 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 MPHOSPH6Q99547 160 aaKnown RBP11.3□□□□□ -0.6
TCOF1-212ENST00000513538 LRFN3Q9BTN0 628 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 C1QTNF1Q9BXJ1 281 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 SUGCTQ9HAC7 445 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 HDAC6Q9UBN7 1215 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 GTF2IRD1Q9UHL9 959 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 MTUS1Q9ULD2 1270 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 COG5Q9UP83 839 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 ATG2AQ2TAZ0 1938 aa11.3□□□□□ -0.6
TCOF1-212ENST00000513538 DOCK5Q9H7D0 1870 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 LINC01553A4QN01 128 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 KIF28PB7ZC32 967 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 OPLAHO14841 1288 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 GJB5O95377 273 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 KCNJ6P48051 423 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 PSEN2P49810 448 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 ZNF200P98182 395 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-212ENST00000513538 MKRN4PQ13434 485 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-212ENST00000513538 QRICH1Q2TAL8 776 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 GPATCH4Q5T3I0 446 aaKnown RBP11.29□□□□□ -0.6
TCOF1-212ENST00000513538 CNKSR3Q6P9H4 555 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 ADGRF4Q8IZF3 695 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 PNMA1Q8ND90 353 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 FAM122AQ96E09 287 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 RMDN3Q96TC7 470 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 JMJD4Q9H9V9 463 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 DDX41Q9UJV9 622 aaKnown RBP11.29□□□□□ -0.6
TCOF1-212ENST00000513538 ABCB11O95342 1321 aa11.29□□□□□ -0.6
TCOF1-212ENST00000513538 NLRC5Q86WI3 1866 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 B4E1Z4 1266 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 HAS3O00219 553 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 KDM4AO75164 1064 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 RGS20O76081 388 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 F2P00734 622 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 PCP11498 1178 aaKnown RBP11.28□□□□□ -0.6
TCOF1-212ENST00000513538 HOXD8P13378 290 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-212ENST00000513538 EIF2AK2P19525 551 aaKnown RBP11.28□□□□□ -0.6
TCOF1-212ENST00000513538 ERVK-21P61565 698 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 MFSD10Q14728 455 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 KIAA0753Q2KHM9 967 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 ZNF618Q5T7W0 954 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 DGKHQ86XP1 1220 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 CCDC155Q8N6L0 562 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 NSUN6Q8TEA1 469 aaKnown RBP11.28□□□□□ -0.6
TCOF1-212ENST00000513538 ANKS1AQ92625 1134 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 CRBNQ96SW2 442 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 ALG1Q9BT22 464 aa11.28□□□□□ -0.6
TCOF1-212ENST00000513538 BAZ2BQ9UIF8 2168 aaKnown RBP11.27□□□□□ -0.6
TCOF1-212ENST00000513538 FAM86C2PA6NEL3 165 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 B4DLN1 442 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 SORBS3O60504 671 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 PPP1R11O60927 126 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 NR3C2P08235 984 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 CASTP20810 708 aaKnown RBP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 MRPL12P52815 198 aaKnown RBP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 RRP1P56182 461 aaKnown RBP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 HDAC1Q13547 482 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 STXBP2Q15833 593 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 DGKDQ16760 1214 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 SLC35G1Q2M3R5 365 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 FAM117BQ6P1L5 589 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 ENAHQ8N8S7 591 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 IL31RAQ8NI17 732 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 ESR2Q92731 530 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 EMID1Q96A84 441 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-212ENST00000513538 OSBPL7Q9BZF2 842 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 LNPKQ9C0E8 428 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 PXMP2Q9NR77 195 aa11.27□□□□□ -0.61
TCOF1-212ENST00000513538 ABHD14A-ACY1A0A1B0GW23 586 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 TRIM6-TRIM34B2RNG4 842 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 SDSP20132 328 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 GHRHRQ02643 423 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 PTK7Q13308 1070 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 ASPRV1Q53RT3 343 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 ARHGEF16Q5VV41 709 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 FBXO11Q86XK2 927 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 TICAM2Q86XR7 235 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 STAG2Q8N3U4 1231 aa11.26□□□□□ -0.61
TCOF1-212ENST00000513538 C7orf31Q8N865 590 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms