RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 GTF2IRD1Q9UHL9 959 aa13.69□□□□□ -0.22
RNF4-216ENST00000511859 STX8Q9UNK0 236 aa13.69□□□□□ -0.22
RNF4-216ENST00000511859 RIF1Q5UIP0 2472 aaKnown RBP13.68□□□□□ -0.22
RNF4-216ENST00000511859 NFIBO00712 420 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 GPAA1O43292 621 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 AMHP03971 560 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 CALML3P27482 149 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 GPM6BQ13491 265 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 SP7Q8TDD2 431 aaPredicted RBP13.68□□□□□ -0.22
RNF4-216ENST00000511859 DHX38Q92620 1227 aaKnown RBP13.68□□□□□ -0.22
RNF4-216ENST00000511859 CHMP4CQ96CF2 233 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 PHOX2BQ99453 314 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 NACAP1Q9BZK3 213 aa13.68□□□□□ -0.22
RNF4-216ENST00000511859 NSUN3Q9H649 340 aaKnown RBP13.68□□□□□ -0.22
RNF4-216ENST00000511859 EMSYQ7Z589 1322 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 LGR5O75473 907 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 ZFYP08048 801 aaPredicted RBP13.67□□□□□ -0.22
RNF4-216ENST00000511859 PTK7Q13308 1070 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 SMAD2Q15796 467 aaKnown RBP13.67□□□□□ -0.22
RNF4-216ENST00000511859 TCTN1Q2MV58 587 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 TCEAL5Q5H9L2 206 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 BTNL9Q6UXG8 535 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 C7orf31Q8N865 590 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 KBTBD3Q8NAB2 608 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 ANKS1AQ92625 1134 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 EDAQ92838 391 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 CLDND1Q9NY35 253 aa13.67□□□□□ -0.22
RNF4-216ENST00000511859 RNF113AO15541 343 aaKnown RBP13.66□□□□□ -0.22
RNF4-216ENST00000511859 GH1P01241 217 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 MMP3P08254 477 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 RPS6P62753 249 aaKnown RBP13.66□□□□□ -0.22
RNF4-216ENST00000511859 DGKDQ16760 1214 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 CCDC62Q6P9F0 684 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.66□□□□□ -0.22
RNF4-216ENST00000511859 TMEM192Q8IY95 271 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 MYOCDQ8IZQ8 938 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 DCAF4Q8WV16 495 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 AFG1LQ8WV93 481 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 CLEC4DQ8WXI8 215 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 KAT2BQ92831 832 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 KATNAL1Q9BW62 490 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 HDAC6Q9UBN7 1215 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 MUTYHQ9UIF7 546 aa13.66□□□□□ -0.22
RNF4-216ENST00000511859 MYO15AQ9UKN7 3530 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 MYH7BA7E2Y1 1941 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 NLRC5Q86WI3 1866 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 TSPY2A6NKD2 308 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 ARIH2O95376 493 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 LTBRP36941 435 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 CTC1Q2NKJ3 1217 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 ZNF618Q5T7W0 954 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 SLC30A10Q6XR72 485 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 RNF135Q8IUD6 432 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 PRSS33Q8NF86 280 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 PBXIP1Q96AQ6 731 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 MAF1Q9H063 256 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 IRF2BPLQ9H1B7 796 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 IL17RBQ9NRM6 502 aa13.65□□□□□ -0.22
RNF4-216ENST00000511859 KIAA1217Q5T5P2 1943 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 NOVP48745 357 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 PPARAQ07869 468 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
RNF4-216ENST00000511859 CCDC96Q2M329 555 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 TRIM71Q2Q1W2 868 aaKnown RBP13.64□□□□□ -0.23
RNF4-216ENST00000511859 IER5LQ5T953 404 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 SYDE2Q5VT97 1194 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 TRAF7Q6Q0C0 670 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 SIRT2Q8IXJ6 389 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 RGS22Q8NE09 1264 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 DBF4BQ8NFT6 615 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 TOP1MTQ969P6 601 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 YTHDC1Q96MU7 727 aaKnown RBP13.64□□□□□ -0.23
RNF4-216ENST00000511859 YME1L1Q96TA2 773 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 FAM186AA6NE01 2351 aa13.64□□□□□ -0.23
RNF4-216ENST00000511859 CACNA1AO00555 2505 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 RALGAPA2Q2PPJ7 1873 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 MBTPS2O43462 519 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 SLC16A2P36021 539 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 HNRNPUQ00839 825 aaKnown RBP eCLIP13.63□□□□□ -0.23
RNF4-216ENST00000511859 ARHGAP1Q07960 439 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 MBTPS1Q14703 1052 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 TTBK2Q6IQ55 1244 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 TRIM67Q6ZTA4 783 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 RPAINQ86UA6 219 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 FBXO11Q86XK2 927 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 SUGP1Q8IWZ8 645 aaKnown RBP13.63□□□□□ -0.23
RNF4-216ENST00000511859 LRRCC1Q9C099 1032 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 NAPBQ9H115 298 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 ECHDC1Q9NTX5 307 aa13.63□□□□□ -0.23
RNF4-216ENST00000511859 TMEM221A6NGB7 291 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 RSPH10B2B2RC85 870 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 M0R296 226 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 M0R2C6 588 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 HAS3O00219 553 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 GFRA3O60609 400 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 RB1P06400 928 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 RSPH10BP0C881 870 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 MS4A1P11836 297 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 PSEN2P49810 448 aa13.62□□□□□ -0.23
RNF4-216ENST00000511859 TCF15Q12870 199 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms