RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 KCNG1Q9UIX4 513 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 APOBEC2Q9Y235 224 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 ERBINQ96RT1 1412 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ARPC4-TTLL3A0A0A6YYG9 625 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 DKC1O60832 514 aaKnown RBP eCLIP3.88□□□□□ -1.79
USP53-205ENST00000509769 WBP4O75554 376 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 IDEP14735 1019 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 CDH2P19022 906 aaPredicted RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 CTNNA1P35221 906 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 MLH1P40692 756 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 RAP1GAPP47736 663 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ZNF75DP51815 510 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ARHGDIAP52565 204 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 PTK2BQ14289 1009 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ACAP2Q15057 778 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ARMCX4Q5H9R4 360 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 PRPF38BQ5VTL8 546 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 ZNF280DQ6N043 979 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 POTEEQ6S8J3 1075 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SMCR8Q8TEV9 937 aaPredicted RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 LRRC39Q96DD0 335 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SNF8Q96H20 258 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 GPR101Q96P66 508 aaPredicted RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 OSBPL1AQ9BXW6 950 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 RHOBTB2Q9BYZ6 727 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 CCDC134Q9H6E4 229 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 RRAGDQ9NQL2 400 aaPredicted RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 FKBP14Q9NWM8 211 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 STK26Q9P289 416 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TMCO1Q9UM00 188 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TMED5Q9Y3A6 229 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 NRKQ7Z2Y5 1582 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 NOS1P29475 1434 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 C10orf71Q711Q0 1435 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 CASKIN1Q8WXD9 1431 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SMIM23A6NLE4 172 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 PFDN6O15212 129 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SOX12O15370 315 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SYNCRIPO60506 623 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 GSTA1P08263 222 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 DDX5P17844 614 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 RNASE9P60153 205 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 RUNX1T1Q06455 604 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 DNAJC3Q13217 504 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 NNTQ13423 1086 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 MAPRE2Q15555 327 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ANO6Q4KMQ2 910 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 C10orf76Q5T2E6 689 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SWT1Q5T5J6 900 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 KRT77Q7Z794 578 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 CCDC84Q86UT8 332 aaPredicted RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 ICA1LQ8NDH6 482 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ERMNQ8TAM6 284 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 POP5Q969H6 163 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 ZFRQ96KR1 1074 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 FHDC1Q9C0D6 1143 aaPredicted RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 ADAM30Q9UKF2 790 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SAR1BQ9Y6B6 198 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 PLSCR1O15162 318 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 RANBP6O60518 1105 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 CRCPO75575 148 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 GNA14O95837 355 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ATP5BP06576 529 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 RPL13P26373 211 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 SERPINB6P35237 376 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 SYKP43405 635 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 ACADVLP49748 655 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 PPIDQ08752 370 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 TAB1Q15750 504 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TRIM16LQ309B1 348 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 GRPEL2Q8TAA5 225 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 FAM81AQ8TBF8 368 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TRIM11Q96F44 468 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 MAGED4Q96JG8 741 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TMX1Q9H3N1 280 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 HPS5Q9UPZ3 1129 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 TRPC6Q9Y210 931 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 USP47Q96K76 1375 aa3.88□□□□□ -1.79
USP53-205ENST00000509769 MARF1Q9Y4F3 1742 aaKnown RBP3.88□□□□□ -1.79
USP53-205ENST00000509769 KIF1AQ12756 1690 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 ARHGEF5Q12774 1597 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 SRRM3A6NNA2 597 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 G3V3G9 751 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 STAM2O75886 525 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 EPB41P11171 864 aaKnown RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 HMOX2P30519 316 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 KCNJ6P48051 423 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CCT5P48643 541 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 UBXN1Q04323 297 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 FLIIQ13045 1269 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 RCN1Q15293 331 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 CNGA3Q16281 694 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 DNAL1Q4LDG9 190 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 HP1BP3Q5SSJ5 553 aaPredicted RBP3.87□□□□□ -1.79
USP53-205ENST00000509769 DCAF8Q5TAQ9 597 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 KRT73Q86Y46 540 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 PEX5LQ8IYB4 626 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 EPS8L1Q8TE68 723 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 FAM81BQ96LP2 452 aa3.87□□□□□ -1.79
USP53-205ENST00000509769 PDCD10Q9BUL8 212 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms