RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 OTUD6AQ7L8S5 288 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TRIM59Q8IWR1 403 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ATP6V1E2Q96A05 226 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 VPS39Q96JC1 886 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TRIM8Q9BZR9 551 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 TRPV6Q9H1D0 765 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ASCC2Q9H1I8 757 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 RAD21L1Q9H4I0 556 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 ZNF212Q9UDV6 495 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 V9GY48 417 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 CFTRP13569 1480 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 NESP48681 1621 aa12.12□□□□□ -0.47
LIMCH1-208ENST00000508501 WDR47O94967 919 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 KRT16P08779 473 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 ACADSP16219 412 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 NCF2P19878 526 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 IL10P22301 178 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 CASP2P42575 452 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 PNOCQ13519 176 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 SLC4A7Q9Y6M7 1214 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 FAM135AQ9P2D6 1515 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 RASSF7Q02833 373 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 EXOC3L4Q17RC7 722 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 NOSTRINQ8IVI9 506 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 SBNO2Q9Y2G9 1366 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 POLR2FP61218 127 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 MORF4L2Q15014 288 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 CDR2LQ86X02 465 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 DTX3LQ8TDB6 740 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 CFAP36Q96G28 342 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 ETNK1Q9HBU6 452 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 TARSL2A2RTX5 802 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 TOM1L1O75674 476 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 SEC24BO95487 1268 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 PYGMP11217 842 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 OCRLQ01968 901 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 KIF23Q02241 960 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 KPNB1Q14974 876 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 MAN2A1Q16706 1144 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 ZNF710Q8N1W2 664 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 DDHD1Q8NEL9 900 aa12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 UHMK1Q8TAS1 419 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-208ENST00000508501 UBE4BO95155 1302 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 A6NJR5 290 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 PRR23D1E9PI22 279 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 CFLARO15519 480 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 DNAJC6O75061 913 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 TMCC1O94876 653 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 PRR23D2P0DMB1 279 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 DR1Q01658 176 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 LAMC2Q13753 1193 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 TAF1BQ53T94 588 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 TRAF7Q6Q0C0 670 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 C16orf71Q8IYS4 520 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 NEUROG2Q9H2A3 272 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 PPCSQ9HAB8 311 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 NAIPQ13075 1403 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 HOXB7P09629 217 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 CASP14P31944 242 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 NUP107P57740 925 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 RUNX1T1Q06455 604 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 ADCK1Q86TW2 530 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 RHOT2Q8IXI1 618 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 CMTM5Q96DZ9 223 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 C19orf60Q96EN9 201 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 MTMR6Q9Y217 621 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 MSH6P52701 1360 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 GRID2IPA4D2P6 1211 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 CYP2C19P33261 490 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 PPARGP37231 505 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 PDCLQ13371 301 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 RASSF3Q86WH2 238 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 TRIM69Q86WT6 500 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 VSTM4Q8IW00 320 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 SLFN12Q8IYM2 578 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 MAML1Q92585 1016 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 TUBGCP2Q9BSJ2 902 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 BRD8Q9H0E9 1235 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 PIK3C2GO75747 1445 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 HP1BP3Q5SSJ5 553 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 C3orf20Q8ND61 904 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 AK8Q96MA6 479 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 FBXO2Q9UK22 296 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 RGS12O14924 1447 aa12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 TROQ12816 1431 aaPredicted RBP12.1□□□□□ -0.47
LIMCH1-208ENST00000508501 ASXL1Q8IXJ9 1541 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 SGK1O00141 431 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 PFKFB2O60825 505 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 NR1I2O75469 434 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 HSPA4LO95757 839 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 POTEAQ6S8J7 498 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 ZNF713Q8N859 430 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 KBTBD3Q8NAB2 608 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 KLC2Q9H0B6 622 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 COPEO14579 308 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 RPN1P04843 607 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 DDX5P17844 614 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 TNNI1P19237 187 aa12.09□□□□□ -0.47
LIMCH1-208ENST00000508501 TTLL12Q14166 644 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms