RNA–Protein interactions for RNA: ENST00000508171.5

LIN54-207, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

TSL 1 (best)

Gene LIN54, Length 2,684 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-207ENST00000508171 EIF3CLB5ME19 914 aaKnown RBP12.15□□□□□ -0.46
LIN54-207ENST00000508171 ZNF185O15231 689 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 CYP2C19P33261 490 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 PPP1R2P41236 205 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 CCDC96Q2M329 555 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 SMCR8Q8TEV9 937 aaPredicted RBP12.15□□□□□ -0.46
LIN54-207ENST00000508171 EIF3CQ99613 913 aaKnown RBP12.15□□□□□ -0.46
LIN54-207ENST00000508171 RAB34Q9BZG1 259 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 MMRN2Q9H8L6 949 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.15□□□□□ -0.46
LIN54-207ENST00000508171 ATP6V0A2Q9Y487 856 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 PCDHAC2Q9Y5I4 1007 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L15C9J2P7 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L13C9JLJ4 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L11C9JVI0 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L18D6R9N7 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L22D6RA61 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L17D6RBQ6 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L19D6RCP7 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L20D6RJB6 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 POTEB2H3BUK9 544 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 CACNB3P54284 484 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L24Q0WX57 530 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 PPP4R3AQ6IN85 833 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 USP17L6PQ6QN14 398 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 C2CD5Q86YS7 1000 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 CCDC170Q8IYT3 715 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 GUF1Q8N442 669 aaKnown RBP12.15□□□□□ -0.46
LIN54-207ENST00000508171 PSTPIP2Q9H939 334 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 TBC1D7Q9P0N9 293 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 ARHGAP20Q9P2F6 1191 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 PLAGL2Q9UPG8 496 aa12.15□□□□□ -0.46
LIN54-207ENST00000508171 A0A1W2PQJ5 194 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 ZBTB5O15062 677 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 EHHADHQ08426 723 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 TMEM119Q4V9L6 283 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 FIGNQ5HY92 759 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 MEX3CQ5U5Q3 659 aaKnown RBP12.14□□□□□ -0.47
LIN54-207ENST00000508171 PAPD7Q5XG87 772 aaKnown RBP12.14□□□□□ -0.47
LIN54-207ENST00000508171 APOBEC3HQ6NTF7 200 aaKnown RBP12.14□□□□□ -0.47
LIN54-207ENST00000508171 ZNF662Q6ZS27 426 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 CUL5Q93034 780 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 DNAJC19Q96DA6 116 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 CCDC42Q96M95 316 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 FGFBP2Q9BYJ0 223 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 PDE11AQ9HCR9 933 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 PCDHA12Q9UN75 941 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 ARFGEF1Q9Y6D6 1849 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 MARCH6O60337 910 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 ONECUT3O60422 494 aaPredicted RBP12.14□□□□□ -0.47
LIN54-207ENST00000508171 N4BP1O75113 896 aaKnown RBP12.14□□□□□ -0.47
LIN54-207ENST00000508171 TRIM37O94972 964 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 IPO7O95373 1038 aaKnown RBP12.14□□□□□ -0.47
LIN54-207ENST00000508171 SSBP05455 408 aaKnown RBP eCLIP12.14□□□□□ -0.47
LIN54-207ENST00000508171 TUBB4BP68371 445 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 TCP10Q12799 353 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 LRRC55Q6ZSA7 311 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 HDXQ7Z353 690 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 LRRC37AA6NMS7 1700 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 AFF2P51816 1311 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 E9PMD0 336 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 MRPL12P52815 198 aaKnown RBP12.14□□□□□ -0.47
LIN54-207ENST00000508171 MAN2A1Q16706 1144 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 DNAJC18Q9H819 358 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 SWAP70Q9UH65 585 aa12.14□□□□□ -0.47
LIN54-207ENST00000508171 ANKRD31Q8N7Z5 1873 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 NPHP3-ACAD11A0A0J9YXS1 232 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 PDE2AO00408 941 aaPredicted RBP12.13□□□□□ -0.47
LIN54-207ENST00000508171 ERLIN1O75477 346 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 EIF4A3P38919 411 aaKnown RBP12.13□□□□□ -0.47
LIN54-207ENST00000508171 CDK17Q00537 523 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 CACNB1Q02641 598 aaPredicted RBP12.13□□□□□ -0.47
LIN54-207ENST00000508171 RAD51AP2Q09MP3 1159 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 KIF5AQ12840 1032 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 RRAGAQ7L523 313 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 PROM2Q8N271 834 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 LRRC53A6NM62 1247 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 ZMYND10O75800 440 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 HNRNPH3P31942 346 aaKnown RBP12.13□□□□□ -0.47
LIN54-207ENST00000508171 VAV2P52735 878 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 FAM193AP78312 1265 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 LRRC63Q05C16 580 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 COASYQ13057 564 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 SPA17Q15506 151 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 GPATCH4Q5T3I0 446 aaKnown RBP12.13□□□□□ -0.47
LIN54-207ENST00000508171 NEK11Q8NG66 645 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 PURBQ96QR8 312 aaKnown RBP12.13□□□□□ -0.47
LIN54-207ENST00000508171 HINFPQ9BQA5 517 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 KANSL2Q9H9L4 492 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 JADE2Q9NQC1 790 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 PANK4Q9NVE7 773 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 KIAA1024Q9UPX6 916 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 ATF5Q9Y2D1 282 aaPredicted RBP12.13□□□□□ -0.47
LIN54-207ENST00000508171 SUGT1Q9Y2Z0 365 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 PCDHA13Q9Y5I0 950 aa12.13□□□□□ -0.47
LIN54-207ENST00000508171 SPATA31A6Q5VVP1 1343 aa12.12□□□□□ -0.47
LIN54-207ENST00000508171 USP14P54578 494 aa12.12□□□□□ -0.47
LIN54-207ENST00000508171 SNAP25P60880 206 aa12.12□□□□□ -0.47
LIN54-207ENST00000508171 KCNMA1Q12791 1236 aa12.12□□□□□ -0.47
LIN54-207ENST00000508171 CASP8Q14790 479 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms