RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 KCNMB1Q16558 191 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 GLIPR1L2Q4G1C9 344 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 CCDC184Q52MB2 194 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 ZNF790Q6PG37 636 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 CREG2Q8IUH2 290 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 BAHD1Q8TBE0 780 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 LIN37Q96GY3 246 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 ZNF496Q96IT1 587 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 C19orf73Q9NVV2 129 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 SCN7AQ01118 1682 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 HTATSF1O43719 755 aaKnown RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 RPS6KA4O75676 772 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 HTR3BO95264 441 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 CYP19A1P11511 503 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 GARTP22102 1010 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 HMGB2P26583 209 aaKnown RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 YARSP54577 528 aaKnown RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 NFE2L2Q16236 605 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 FBXL19Q6PCT2 694 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 CYB5D2Q8WUJ1 264 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 SYT17Q9BSW7 474 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 THUMPD2Q9BTF0 503 aaKnown RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 KRTAP17-1Q9BYP8 105 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 PPP1R1BQ9UD71 204 aaPredicted RBP6.33□□□□□ -1.4
CSMD3-208ENST00000497026 ZBTB1Q9Y2K1 713 aa6.33□□□□□ -1.4
CSMD3-208ENST00000497026 BCORQ6W2J9 1755 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 SOS1Q07889 1333 aaPredicted RBP6.32□□□□□ -1.4
CSMD3-208ENST00000497026 DNAJC25-GNG10A0A024R161 153 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 PRAMEF22A3QJZ6 481 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 ZNF503-AS2A6NEH8 195 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 ESR1P03372 595 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 TPP2P29144 1249 aaPredicted RBP6.32□□□□□ -1.4
CSMD3-208ENST00000497026 PWP1Q13610 501 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 MLANAQ16655 118 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 RALGPS1Q5JS13 557 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 TMEM201Q5SNT2 666 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 THAP5Q7Z6K1 395 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 TTC6Q86TZ1 520 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 CCDC146Q8IYE0 955 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 TTC5Q8N0Z6 440 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 TMEM40Q8WWA1 233 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 RTF1Q92541 710 aaKnown RBP6.32□□□□□ -1.4
CSMD3-208ENST00000497026 ALPK1Q96QP1 1244 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 KIF2CQ99661 725 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 DUSP15Q9H1R2 295 aaPredicted RBP6.32□□□□□ -1.4
CSMD3-208ENST00000497026 NOP58Q9Y2X3 529 aaKnown RBP6.32□□□□□ -1.4
CSMD3-208ENST00000497026 UTRNP46939 3433 aa6.32□□□□□ -1.4
CSMD3-208ENST00000497026 COL15A1P39059 1388 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 USP42Q9H9J4 1324 aaKnown RBP6.31□□□□□ -1.4
CSMD3-208ENST00000497026 MAPK8IP3Q9UPT6 1336 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 BRCA1P38398 1863 aaKnown RBP6.31□□□□□ -1.4
CSMD3-208ENST00000497026 NRXN2Q9P2S2 1712 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 LRRC10BA6NIK2 292 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 GYS1P13807 737 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 TMPOP42166 694 aaKnown RBP6.31□□□□□ -1.4
CSMD3-208ENST00000497026 AFMP43652 599 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 HK2P52789 917 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 ERVFC1P60507 584 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 ERMP1Q7Z2K6 904 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 REC114Q7Z4M0 266 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 DTWD2Q8NBA8 298 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 NLGN2Q8NFZ4 835 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 BRMS1Q9HCU9 246 aa6.31□□□□□ -1.4
CSMD3-208ENST00000497026 AFDNP55196 1824 aaKnown RBP6.31□□□□□ -1.4
CSMD3-208ENST00000497026 DBX1A6NMT0 343 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-208ENST00000497026 POLD1P28340 1107 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 MPP2Q14168 576 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 WDR43Q15061 677 aaKnown RBP eCLIP6.3□□□□□ -1.4
CSMD3-208ENST00000497026 PHACTR4Q8IZ21 702 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 PIWIL2Q8TC59 973 aaKnown RBP6.3□□□□□ -1.4
CSMD3-208ENST00000497026 RUNDC1Q96C34 613 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 KIRREL1Q96J84 757 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 COX4I2Q96KJ9 171 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 PNNQ9H307 717 aaKnown RBP6.3□□□□□ -1.4
CSMD3-208ENST00000497026 ADAMTS10Q9H324 1103 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 MIS18AQ9NYP9 233 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 SRP68Q9UHB9 627 aaKnown RBP6.3□□□□□ -1.4
CSMD3-208ENST00000497026 GGT7Q9UJ14 662 aa6.3□□□□□ -1.4
CSMD3-208ENST00000497026 RRP7AQ9Y3A4 280 aaKnown RBP6.3□□□□□ -1.4
CSMD3-208ENST00000497026 N4BP2Q86UW6 1770 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-208ENST00000497026 C10orf71Q711Q0 1435 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 FARP2O94887 1054 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-208ENST00000497026 A1BGP04217 495 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 MMP10P09238 476 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 RFC4P35249 363 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 EIF4A3P38919 411 aaKnown RBP6.29□□□□□ -1.4
CSMD3-208ENST00000497026 GDNFP39905 211 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 CRKP46108 304 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 EIF5P55010 431 aaKnown RBP6.29□□□□□ -1.4
CSMD3-208ENST00000497026 RIPK4P57078 832 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 TAF7Q15545 349 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-208ENST00000497026 MPZL3Q6UWV2 235 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 SLFN12Q8IYM2 578 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 KREMEN1Q96MU8 473 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 KCNK12Q9HB15 430 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 ADAMTS1Q9UHI8 967 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 PCDHB14Q9Y5E9 798 aa6.29□□□□□ -1.4
CSMD3-208ENST00000497026 USP16Q9Y5T5 823 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms