RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NEDD9Q14511 834 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 PTPROQ16827 1216 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 H2AFVQ71UI9 128 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 PI4K2BQ8TCG2 481 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 ABCA8O94911 1581 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 CYP2D7A0A087X1C5 515 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 PSMC2P35998 433 aaKnown RBP14.33□□□□□ -0.12
PTPRF-215ENST00000496447 CDK8P49336 464 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 ZNF131P52739 623 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 WHAMMP3Q1A5X7 153 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 RINT1Q6NUQ1 792 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 PHBP35232 272 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 MUM1L1Q5H9M0 696 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 GAS2L3Q86XJ1 694 aa14.33□□□□□ -0.12
PTPRF-215ENST00000496447 CARMIL3Q8ND23 1372 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 EFCAB8A8MWE9 144 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 ICE2Q659A1 982 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 CCDC62Q6P9F0 684 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 CNOT6LQ96LI5 555 aaKnown RBP14.32□□□□□ -0.12
PTPRF-215ENST00000496447 SUDS3Q9H7L9 328 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-215ENST00000496447 PSDA5PKW4 1024 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-215ENST00000496447 CACNB1Q02641 598 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-215ENST00000496447 MAP7D3Q8IWC1 876 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 OSBP2Q969R2 916 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 CCDC68Q9H2F9 335 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 VPS41P49754 854 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 ARPP19P56211 112 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 PIH1D3Q9NQM4 214 aaKnown RBP14.32□□□□□ -0.12
PTPRF-215ENST00000496447 FANCLQ9NW38 375 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 NARFQ9UHQ1 456 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 HYOU1Q9Y4L1 999 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 ADGRL3Q9HAR2 1447 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 MEIS1O00470 390 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 THAP12O43422 761 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 ASNSP08243 561 aa14.32□□□□□ -0.12
PTPRF-215ENST00000496447 NOC2LQ9Y3T9 749 aaKnown RBP14.32□□□□□ -0.12
PTPRF-215ENST00000496447 XPAP23025 273 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-215ENST00000496447 ABCD1P33897 745 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 RBM6P78332 1123 aaKnown RBP14.31□□□□□ -0.12
PTPRF-215ENST00000496447 BFSP1Q12934 665 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 SH2D4BQ5SQS7 431 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 RASEFQ8IZ41 740 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 CABS1Q96KC9 395 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 PPP1R16BQ96T49 567 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 MED4Q9NPJ6 270 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 DDX41Q9UJV9 622 aaKnown RBP14.31□□□□□ -0.12
PTPRF-215ENST00000496447 ABCC12Q96J65 1359 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 SH2B2O14492 632 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-215ENST00000496447 HGSO14964 777 aaPredicted RBP14.31□□□□□ -0.12
PTPRF-215ENST00000496447 PPP6R2O75170 966 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 EIF2AK2P19525 551 aaKnown RBP14.31□□□□□ -0.12
PTPRF-215ENST00000496447 TFAMQ00059 246 aaKnown RBP14.31□□□□□ -0.12
PTPRF-215ENST00000496447 HLFQ16534 295 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 TMEM179Q6ZVK1 233 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 FAM149B1Q96BN6 582 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 MYO3BQ8WXR4 1341 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 ZBTB7AO95365 584 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 CRKP46108 304 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 PPP2R5EQ16537 467 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 UBE2SQ16763 222 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 KRT71Q3SY84 523 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 CCDC38Q502W7 563 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 KAZNQ674X7 775 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 FAM186BQ8IYM0 893 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 BBS5Q8N3I7 341 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 MICAL1Q8TDZ2 1067 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 TMEM206Q9H813 350 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 SYNMO15061 1565 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 PPARDQ03181 441 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 SLC39A14Q15043 492 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 PDXDC2PQ6P474 469 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 ZBTB33Q86T24 672 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 FAM71BQ8TC56 605 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 ARHGEF37A1IGU5 675 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 RPGRIP1Q96KN7 1286 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 DESI2Q9BSY9 194 aa14.31□□□□□ -0.12
PTPRF-215ENST00000496447 ESYT2A0FGR8 921 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 VSIG1Q86XK7 387 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 MAP3K4Q9Y6R4 1608 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 CDC42BPGQ6DT37 1551 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 PNMA6FA0A0J9YX94 578 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 H7C0C1 242 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 LUC7L3O95232 432 aaKnown RBP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 GH2P01242 217 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 ATP5OP48047 213 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 PSMD6Q15008 389 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 MCUR1Q96AQ8 359 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 EEF2KMTQ96G04 330 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 GSDMAQ96QA5 445 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 PCIF1Q9H4Z3 704 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 A0A087WUV0 522 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 COPB1P53618 953 aaKnown RBP14.3□□□□□ -0.12
PTPRF-215ENST00000496447 CACNB3P54284 484 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 MAP7Q14244 749 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 PRPSAP1Q14558 356 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 LRRC41Q15345 812 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.3□□□□□ -0.121e-7■■■□□ 16
PTPRF-215ENST00000496447 TTC37Q6PGP7 1564 aa14.3□□□□□ -0.12
PTPRF-215ENST00000496447 HOXA13P31271 388 aaPredicted RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms