RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 HMGB1P09429 215 aaKnown RBP18.16■□□□□ 0.5
HDAC4-213ENST00000496347 SUPT20HL2P0C7V6 817 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 CCND2P30279 289 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 EPHB4P54760 987 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 FAM109BQ6ICB4 259 aaPredicted RBP18.16■□□□□ 0.5
HDAC4-213ENST00000496347 TMTC3Q6ZXV5 915 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 MICU3Q86XE3 530 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 DEFB123Q8N688 67 aa18.16■□□□□ 0.5
HDAC4-213ENST00000496347 STAM2O75886 525 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 SMAD3P84022 425 aaKnown RBP18.15■□□□□ 0.5
HDAC4-213ENST00000496347 PTPN11Q06124 597 aaPredicted RBP18.15■□□□□ 0.5
HDAC4-213ENST00000496347 LY6KQ17RY6 165 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 PSRC1Q6PGN9 363 aaPredicted RBP18.15■□□□□ 0.5
HDAC4-213ENST00000496347 APOA5Q6Q788 366 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 SYNE3Q6ZMZ3 975 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 DHX32Q7L7V1 743 aaKnown RBP18.15■□□□□ 0.5
HDAC4-213ENST00000496347 VSIG10LQ86VR7 867 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 IL31RAQ8NI17 732 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 PPTC7Q8NI37 304 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 AFG1LQ8WV93 481 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 NOC4LQ9BVI4 516 aaKnown RBP18.15■□□□□ 0.5
HDAC4-213ENST00000496347 LRRC2Q9BYS8 371 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 PPP1R12CQ9BZL4 782 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 TRPV6Q9H1D0 765 aa18.15■□□□□ 0.5
HDAC4-213ENST00000496347 DDX41Q9UJV9 622 aaKnown RBP18.15■□□□□ 0.5
HDAC4-213ENST00000496347 REC8O95072 547 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 TGFB3P10600 412 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 RXRAP19793 462 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 RCAN1P53805 252 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 LAMC2Q13753 1193 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 DGKDQ16760 1214 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 GNPTABQ3T906 1256 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 FCHSD1Q86WN1 690 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 RASEFQ8IZ41 740 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 SRBD1Q8N5C6 995 aaKnown RBP18.14■□□□□ 0.49
HDAC4-213ENST00000496347 FANCBQ8NB91 859 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 PIBF1Q8WXW3 757 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 CUL5Q93034 780 aa18.14■□□□□ 0.49
HDAC4-213ENST00000496347 RBM28Q9NW13 759 aaKnown RBP18.14■□□□□ 0.49
HDAC4-213ENST00000496347 RGS20O76081 388 aa18.13■□□□□ 0.49
HDAC4-213ENST00000496347 MYCLP12524 364 aaPredicted RBP18.13■□□□□ 0.49
HDAC4-213ENST00000496347 HOXD8P13378 290 aaPredicted RBP18.13■□□□□ 0.49
HDAC4-213ENST00000496347 CSF2RAP15509 400 aa18.13■□□□□ 0.49
HDAC4-213ENST00000496347 EXOSC10Q01780 885 aaKnown RBP18.13■□□□□ 0.49
HDAC4-213ENST00000496347 NBPF20Q3BBV1 942 aa18.13■□□□□ 0.49
HDAC4-213ENST00000496347 TEX2Q8IWB9 1127 aa18.13■□□□□ 0.49
HDAC4-213ENST00000496347 KCNB2Q92953 911 aa18.13■□□□□ 0.49
HDAC4-213ENST00000496347 KATNAL1Q9BW62 490 aa18.13■□□□□ 0.49
HDAC4-213ENST00000496347 TRMT13Q9NUP7 481 aaKnown RBP18.13■□□□□ 0.49
HDAC4-213ENST00000496347 F2P00734 622 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 CASTP20810 708 aaKnown RBP18.12■□□□□ 0.49
HDAC4-213ENST00000496347 UBA1P22314 1058 aaKnown RBP18.12■□□□□ 0.49
HDAC4-213ENST00000496347 CYP2C18P33260 490 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 HSPA4P34932 840 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 ADCK5Q3MIX3 580 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 FAM47CQ5HY64 1035 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 ZNF697Q5TEC3 545 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 XRRA1Q6P2D8 792 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 Q7L0L9 218 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 SESTD1Q86VW0 696 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 SMARCC2Q8TAQ2 1214 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 INPP4AQ96PE3 977 aaPredicted RBP18.12■□□□□ 0.49
HDAC4-213ENST00000496347 IL23AQ9NPF7 189 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 CNTNAP5Q8WYK1 1306 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 EYSQ5T1H1 3165 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 CHD9Q3L8U1 2897 aa18.12■□□□□ 0.49
HDAC4-213ENST00000496347 TMEM265A0A087WTH1 108 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 PITPNM1O00562 1244 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 ZBTB43O43298 467 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 RTN1Q16799 776 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 RAB11FIP4Q86YS3 637 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 DHX37Q8IY37 1157 aaKnown RBP18.11■□□□□ 0.49
HDAC4-213ENST00000496347 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.11■□□□□ 0.493e-8■■□□□ 11.5
HDAC4-213ENST00000496347 WNT8AQ9H1J5 351 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 MTIF3Q9H2K0 278 aaKnown RBP18.11■□□□□ 0.49
HDAC4-213ENST00000496347 MTMR10Q9NXD2 777 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 DOCK5Q9H7D0 1870 aa18.11■□□□□ 0.49
HDAC4-213ENST00000496347 NID2Q14112 1375 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 UMODL1Q5DID0 1318 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 MEIS2O14770 477 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 EPB41L2O43491 1005 aaKnown RBP18.1■□□□□ 0.49
HDAC4-213ENST00000496347 PFKMP08237 780 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 TMEM240Q5SV17 173 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 CELF3Q5SZQ8 465 aaKnown RBP18.1■□□□□ 0.49
HDAC4-213ENST00000496347 RASIP1Q5U651 963 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 PCNX4Q63HM2 1172 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 PPP1R18Q6NYC8 613 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 CMTR1Q8N1G2 835 aaKnown RBP18.1■□□□□ 0.49
HDAC4-213ENST00000496347 TCEANC2Q96MN5 208 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 PSTPIP2Q9H939 334 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 STXBP5LQ9Y2K9 1186 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 A0A0C4DFX4 3053 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 SCN5AQ14524 2016 aa18.1■□□□□ 0.49
HDAC4-213ENST00000496347 hCG_1984214I3L0E3 225 aa18.09■□□□□ 0.49
HDAC4-213ENST00000496347 FIBPO43427 364 aa18.09■□□□□ 0.49
HDAC4-213ENST00000496347 GGPS1O95749 300 aa18.09■□□□□ 0.49
HDAC4-213ENST00000496347 ICAM3P32942 547 aa18.09■□□□□ 0.49
HDAC4-213ENST00000496347 MYSM1Q5VVJ2 828 aa18.09■□□□□ 0.49
HDAC4-213ENST00000496347 ERICH6BQ5W0A0 696 aa18.09■□□□□ 0.49
HDAC4-213ENST00000496347 USP17L6PQ6QN14 398 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms