RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	AIFM3	Q96NN9	605 aa		11.28	□□□□□ -0.6
CALD1-223	ENST00000496024	HTATIP2	Q9BUP3	242 aa		11.28	□□□□□ -0.6
CALD1-223	ENST00000496024	RIC8A	Q9NPQ8	531 aa		11.28	□□□□□ -0.6
CALD1-223	ENST00000496024	TMEM260	Q9NX78	707 aa		11.28	□□□□□ -0.6
CALD1-223	ENST00000496024	RTEL1	Q9NZ71	1219 aa		11.28	□□□□□ -0.6
CALD1-223	ENST00000496024	VPS54	Q9P1Q0	977 aa		11.28	□□□□□ -0.6
CALD1-223	ENST00000496024	RBM27	Q9P2N5	1060 aa	Known RBP	11.28	□□□□□ -0.6
CALD1-223	ENST00000496024	RBM47	A0AV96	593 aa	Known RBP	11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	PIK3CD	O00329	1044 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	CDKL5	O76039	1030 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	ARIH2	O95376	493 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	GJA9	P57773	515 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	TTLL4	Q14679	1199 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	LY6K	Q17RY6	165 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	DUSP28	Q4G0W2	176 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	JAKMIP3	Q5VZ66	844 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	VSIG10L	Q86VR7	867 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	VTI1A	Q96AJ9	217 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	BACH2	Q9BYV9	841 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	PCDHA6	Q9UN73	950 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	LIMCH1	Q9UPQ0	1083 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	GNE	Q9Y223	722 aa	Known RBP	11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	PCDHA8	Q9Y5H6	950 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	MRVI1	Q9Y6F6	885 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	ALPK3	Q96L96	1907 aa		11.27	□□□□□ -0.61
CALD1-223	ENST00000496024	ADAMTS3	O15072	1205 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	EVI5	O60447	810 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	DEXI	O95424	95 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	COL6A1	P12109	1028 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	ACLY	P53396	1101 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	FOSB	P53539	338 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	NLRP5	P59047	1200 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	MRPS9	P82933	396 aa	Known RBP	11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	RABEP1	Q15276	862 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	FSCN1	Q16658	493 aa	Known RBP	11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	LRRC26	Q2I0M4	334 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	KLHDC9	Q8NEP7	349 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	GTF3C6	Q969F1	213 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	TBC1D32	Q96NH3	1257 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	UPF3A	Q9H1J1	476 aa	Known RBP	11.26	□□□□□ -0.61
CALD1-223	ENST00000496024	C6orf50	Q9HD87	102 aa		11.26	□□□□□ -0.61
CALD1-223	ENST00000496024		A0A1W2PQ45	241 aa	Predicted RBP	11.25	□□□□□ -0.61
CALD1-223	ENST00000496024		A0A1W2PQY0	241 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	CTAGE5	O15320	804 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	RGS20	O76081	388 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	CTDNEP1	O95476	244 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	ASGR1	P07306	291 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	MYL3	P08590	195 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	PCNX4	Q63HM2	1172 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	CCDC62	Q6P9F0	684 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	CCDC83	Q8IWF9	413 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	C7orf61	Q8IZ16	206 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	PCSK9	Q8NBP7	692 aa	Known RBP	11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	CCDC148	Q8NFR7	591 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	RASGRP4	Q8TDF6	673 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	TSEN34	Q9BSV6	310 aa	Known RBP	11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	ANO3	Q9BYT9	981 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	ZMYND12	Q9H0C1	365 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	GLT8D2	Q9H1C3	349 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	EHMT1	Q9H9B1	1298 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	ORC3	Q9UBD5	711 aa	Predicted RBP	11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	DDX41	Q9UJV9	622 aa	Known RBP	11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	PHF24	Q9UPV7	400 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	FRMPD4	Q14CM0	1322 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	DOCK5	Q9H7D0	1870 aa		11.25	□□□□□ -0.61
CALD1-223	ENST00000496024	NKRF	O15226	690 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	ST18	O60284	1047 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	JAK2	O60674	1132 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	FOS	P01100	380 aa	Predicted RBP	11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	GH1	P01241	217 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	CST5	P28325	142 aa	Predicted RBP	11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	GNA11	P29992	359 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	CHMP4BP1	P59074	171 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	GNPTAB	Q3T906	1256 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	CXCL17	Q6UXB2	119 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	SLC39A5	Q6ZMH5	540 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	REXO1	Q8N1G1	1221 aa	Known RBP	11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	AFG1L	Q8WV93	481 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	GLT1D1	Q96MS3	346 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	STARD7	Q9NQZ5	370 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	GJB4	Q9NTQ9	266 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	PKD2L1	Q9P0L9	805 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	PCDH10	Q9P2E7	1040 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	KCNJ14	Q9UNX9	436 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	ATP11B	Q9Y2G3	1177 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024		Q9Y3F1	56 aa		11.24	□□□□□ -0.61
CALD1-223	ENST00000496024	ESYT2	A0FGR8	921 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	MOXD2P	A6NHM9	499 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	ZEB2	O60315	1214 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	GGPS1	O95749	300 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	ZNF76	P36508	570 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	CLK2	P49760	499 aa	Known RBP	11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	CPT1A	P50416	773 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	RTP1	P59025	263 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	SP2	Q02086	613 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	ARHGAP1	Q07960	439 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	ST3GAL1	Q11201	340 aa		11.23	□□□□□ -0.61
CALD1-223	ENST00000496024	AP3B2	Q13367	1082 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms