RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 POMZP3Q6PJE2 187 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 LIMS2Q7Z4I7 341 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 STK32CQ86UX6 486 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 DPF3Q92784 378 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 TSC22D4Q9Y3Q8 395 aa6.97□□□□□ -1.29
VPS50-219ENST00000495039 ANKRD34BA5PLL1 514 aa6.96□□□□□ -1.3
VPS50-219ENST00000495039 C22orf46C9J442 243 aa6.96□□□□□ -1.3
VPS50-219ENST00000495039 SCRN1Q12765 414 aa6.96□□□□□ -1.3
VPS50-219ENST00000495039 TEX2Q8IWB9 1127 aa6.96□□□□□ -1.3
VPS50-219ENST00000495039 FAM126BQ8IXS8 530 aa6.96□□□□□ -1.3
VPS50-219ENST00000495039 SH3RF3Q8TEJ3 882 aaPredicted RBP6.96□□□□□ -1.3
VPS50-219ENST00000495039 BTG4Q9NY30 223 aa6.96□□□□□ -1.3
VPS50-219ENST00000495039 EFR3BQ9Y2G0 817 aa6.96□□□□□ -1.3
VPS50-219ENST00000495039 KCNH1O95259 989 aa6.95□□□□□ -1.3
VPS50-219ENST00000495039 ZNF16P17020 682 aaPredicted RBP6.95□□□□□ -1.3
VPS50-219ENST00000495039 PAK2Q13177 524 aa6.95□□□□□ -1.3
VPS50-219ENST00000495039 PRAMEF18Q5VWM3 479 aa6.95□□□□□ -1.3
VPS50-219ENST00000495039 MILR1Q7Z6M3 343 aa6.95□□□□□ -1.3
VPS50-219ENST00000495039 CDK5RAP1Q96SZ6 601 aaKnown RBP6.95□□□□□ -1.3
VPS50-219ENST00000495039 SCAND2PQ9GZW5 306 aaPredicted RBP6.95□□□□□ -1.3
VPS50-219ENST00000495039 GPRC5CQ9NQ84 441 aa6.95□□□□□ -1.3
VPS50-219ENST00000495039 EMC9Q9Y3B6 208 aa6.95□□□□□ -1.3
VPS50-219ENST00000495039 ZNF28P17035 718 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 HMGA2P52926 109 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 PPP2R5EQ16537 467 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 MROH9Q5TGP6 573 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 KIAA1211LQ6NV74 962 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 SPRED1Q7Z699 444 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 RIOX2Q8IUF8 465 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 ZNF654Q8IZM8 581 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 ZNF513Q8N8E2 541 aaPredicted RBP6.94□□□□□ -1.3
VPS50-219ENST00000495039 YIPF4Q9BSR8 244 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 APEX2Q9UBZ4 518 aa6.94□□□□□ -1.3
VPS50-219ENST00000495039 B4GALT3O60512 393 aa6.93□□□□□ -1.3
VPS50-219ENST00000495039 CYP1A1P04798 512 aaPredicted RBP6.93□□□□□ -1.3
VPS50-219ENST00000495039 NAT2P11245 290 aa6.93□□□□□ -1.3
VPS50-219ENST00000495039 STAT5AP42229 794 aa6.93□□□□□ -1.3
VPS50-219ENST00000495039 NKX3-2P78367 333 aa6.93□□□□□ -1.3
VPS50-219ENST00000495039 VHLLQ6RSH7 139 aa6.93□□□□□ -1.3
VPS50-219ENST00000495039 BVESQ8NE79 360 aa6.93□□□□□ -1.3
VPS50-219ENST00000495039 PPP4R1LQ9P1A2 415 aa6.93□□□□□ -1.3
VPS50-219ENST00000495039 NPEPPSL1A6NEC2 478 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 NOP56O00567 594 aaKnown RBP6.92□□□□□ -1.3
VPS50-219ENST00000495039 CYR61O00622 381 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 RPL11P62913 178 aaKnown RBP6.92□□□□□ -1.3
VPS50-219ENST00000495039 ADAM9Q13443 819 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 ICAM4Q14773 271 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 CDSNQ15517 529 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 INF2Q27J81 1249 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 CR1LQ2VPA4 569 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 IQCEQ6IPM2 695 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 CRIP3Q6Q6R5 217 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 APBA2Q99767 749 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 KLC2Q9H0B6 622 aa6.92□□□□□ -1.3
VPS50-219ENST00000495039 CYP7B1O75881 506 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 FPR2P25090 351 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 ZNF143P52747 638 aaPredicted RBP6.91□□□□□ -1.3
VPS50-219ENST00000495039 CASP7P55210 303 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 USP51Q70EK9 711 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 CIR1Q86X95 450 aaPredicted RBP6.91□□□□□ -1.3
VPS50-219ENST00000495039 Q8N1Y9 231 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 RASGRP4Q8TDF6 673 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 GPRASP2Q96D09 838 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 MRIQ9BWK5 157 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 TMEM168Q9H0V1 697 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 L2HGDHQ9H9P8 463 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 CYP26B1Q9NR63 512 aa6.91□□□□□ -1.3
VPS50-219ENST00000495039 TIMM13Q9Y5L4 95 aaPredicted RBP6.91□□□□□ -1.3
VPS50-219ENST00000495039 FZD7O75084 574 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 ACVRL1P37023 503 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 GTF2A2P52657 109 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 GTF2IRD2BQ6EKJ0 949 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 GTF2IRD2Q86UP8 949 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 TRIM59Q8IWR1 403 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 Q8N1X5 172 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 TRMT2BQ96GJ1 504 aaKnown RBP6.9□□□□□ -1.3
VPS50-219ENST00000495039 YTHDC1Q96MU7 727 aaKnown RBP6.9□□□□□ -1.3
VPS50-219ENST00000495039 CLIC6Q96NY7 704 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 ZNF652Q9Y2D9 606 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 X6R8D5 127 aa6.9□□□□□ -1.3
VPS50-219ENST00000495039 MYO1BO43795 1136 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 SLPIP03973 132 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 CHRNA2Q15822 529 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 E4F1Q66K89 784 aaPredicted RBP6.89□□□□□ -1.31
VPS50-219ENST00000495039 ARHGEF18Q6ZSZ5 1173 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 CEP68Q76N32 757 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 NPLOC4Q8TAT6 608 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 FRS2Q8WU20 508 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 MBD6Q96DN6 1003 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 SHDQ96IW2 340 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 VPS11Q9H270 941 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 NKX2-4Q9H2Z4 354 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 DEF6Q9H4E7 631 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 CD248Q9HCU0 757 aa6.89□□□□□ -1.31
VPS50-219ENST00000495039 COA3Q9Y2R0 106 aaPredicted RBP6.89□□□□□ -1.31
VPS50-219ENST00000495039 OVOL3O00110 214 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 GPR42O15529 346 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 IL13P35225 146 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 EPHB4P54760 987 aa6.88□□□□□ -1.31
VPS50-219ENST00000495039 PKN3Q6P5Z2 889 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms