RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 MEA1Q16626 185 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 COBLL1Q53SF7 1204 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 MSL1Q68DK7 614 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 GPIHBP1Q8IV16 184 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CCDC17Q96LX7 622 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 MMRN2Q9H8L6 949 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 ANKZF1Q9H8Y5 726 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 HDAC6Q9UBN7 1215 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 PCDHA1Q9Y5I3 950 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CTAGE15A4D2H0 777 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CTAGE8P0CG41 777 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 QRICH1Q2TAL8 776 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CERKLQ49MI3 558 aaPredicted RBP12.47□□□□□ -0.41
CHMP3-209ENST00000494623 TMEM119Q4V9L6 283 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 SLFN13Q68D06 897 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 NCAPH2Q6IBW4 605 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CTAGE6Q86UF2 777 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 CTAGE4Q8IX94 777 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 GUF1Q8N442 669 aaKnown RBP12.47□□□□□ -0.41
CHMP3-209ENST00000494623 JAKMIP2Q96AA8 810 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 MASTLQ96GX5 879 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 ERGIC2Q96RQ1 377 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 TRIM34Q9BYJ4 488 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 LRRC27Q9C0I9 530 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 NDST4Q9H3R1 872 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 FAM207AQ9NSI2 230 aaPredicted RBP12.47□□□□□ -0.41
CHMP3-209ENST00000494623 TBC1D7Q9P0N9 293 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 MYO3BQ8WXR4 1341 aa12.47□□□□□ -0.41
CHMP3-209ENST00000494623 POLR3GO15318 223 aaPredicted RBP12.46□□□□□ -0.41
CHMP3-209ENST00000494623 IPO7O95373 1038 aaKnown RBP12.46□□□□□ -0.41
CHMP3-209ENST00000494623 WHAMMP3Q1A5X7 153 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 KIAA1024Q9UPX6 916 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 RCCD1A6NED2 376 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 E9PMD0 336 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 ATP8B1O43520 1251 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 FGFR1OPO95684 399 aaKnown RBP12.46□□□□□ -0.41
CHMP3-209ENST00000494623 PODNQ7Z5L7 613 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 MTMR8Q96EF0 704 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 ZDHHC15Q96MV8 337 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 PNKPQ96T60 521 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 LACRTQ9GZZ8 138 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 ATF5Q9Y2D1 282 aaPredicted RBP12.46□□□□□ -0.41
CHMP3-209ENST00000494623 DUSP10Q9Y6W6 482 aa12.46□□□□□ -0.41
CHMP3-209ENST00000494623 EPHB6O15197 1021 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 SRGAP2O75044 1071 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 PLEKP08567 350 aaPredicted RBP12.46□□□□□ -0.42
CHMP3-209ENST00000494623 AMPD2Q01433 879 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 CACNB1Q02641 598 aaPredicted RBP12.46□□□□□ -0.42
CHMP3-209ENST00000494623 SEPT2Q15019 361 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 LONRF2Q1L5Z9 754 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 ZBTB9Q96C00 473 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 CCDC42Q96M95 316 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 TANGO6Q9C0B7 1094 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 BMP2KQ9NSY1 1161 aaPredicted RBP12.46□□□□□ -0.42
CHMP3-209ENST00000494623 PANK4Q9NVE7 773 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 PI4KBQ9UBF8 816 aa12.46□□□□□ -0.42
CHMP3-209ENST00000494623 LTBP1Q14766 1721 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 FOCADQ5VW36 1801 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 EIF3CLB5ME19 914 aaKnown RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 KRT86O43790 486 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 ATP1A1P05023 1023 aaKnown RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 RAD51AP2Q09MP3 1159 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 PSMD2Q13200 908 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 BRD3Q15059 726 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 CDC37Q16543 378 aaPredicted RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 MAN2A1Q16706 1144 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 KRT26Q7Z3Y9 468 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 C2CD5Q86YS7 1000 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 CCDC170Q8IYT3 715 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 MYOCDQ8IZQ8 938 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 DNAJC19Q96DA6 116 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 EIF3CQ99613 913 aaKnown RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 TSG101Q99816 390 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 EHD4Q9H223 541 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 KANSL2Q9H9L4 492 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 FAM198AQ9UFP1 575 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 NPHP3-ACAD11A0A0J9YXS1 232 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 CCDC151A5D8V7 595 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 PSMD14O00487 310 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 GDF11O95390 407 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 GCFC2P16383 781 aaKnown RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 STAT3P40763 770 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 LRRC63Q05C16 580 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 COASYQ13057 564 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 FIGNQ5HY92 759 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 SH3BP5LQ7L8J4 393 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 CCDC155Q8N6L0 562 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 NOA1Q8NC60 698 aaKnown RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 FUT8Q9BYC5 575 aa12.45□□□□□ -0.42
CHMP3-209ENST00000494623 DHX36Q9H2U1 1008 aaKnown RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 ZCCHC17Q9NP64 241 aaKnown RBP12.45□□□□□ -0.42
CHMP3-209ENST00000494623 A0A1W2PQJ5 194 aa12.44□□□□□ -0.42
CHMP3-209ENST00000494623 MACROD2A1Z1Q3 448 aa12.44□□□□□ -0.42
CHMP3-209ENST00000494623 TRAF5O00463 557 aa12.44□□□□□ -0.42
CHMP3-209ENST00000494623 IKQ13123 557 aaPredicted RBP12.44□□□□□ -0.42
CHMP3-209ENST00000494623 SPA17Q15506 151 aa12.44□□□□□ -0.42
CHMP3-209ENST00000494623 SIAH1Q8IUQ4 282 aa12.44□□□□□ -0.42
CHMP3-209ENST00000494623 NELFCDQ8IXH7 590 aa12.44□□□□□ -0.42
CHMP3-209ENST00000494623 MKL1Q969V6 931 aa12.44□□□□□ -0.42
CHMP3-209ENST00000494623 ANO3Q9BYT9 981 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms