RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 TMEM47Q9BQJ4 181 aa15.41■□□□□ 0.06
HDAC3-213ENST00000492506 C5orf42Q9H799 3197 aa15.41■□□□□ 0.06
HDAC3-213ENST00000492506 FRMPD2Q68DX3 1309 aaPredicted RBP15.41■□□□□ 0.06
HDAC3-213ENST00000492506 TTC41PQ6P2S7 1318 aa15.41■□□□□ 0.06
HDAC3-213ENST00000492506 NBNO60934 754 aa15.4■□□□□ 0.06
HDAC3-213ENST00000492506 GJB5O95377 273 aa15.4■□□□□ 0.06
HDAC3-213ENST00000492506 TXNP10599 105 aaKnown RBP15.4■□□□□ 0.06
HDAC3-213ENST00000492506 ERVK-21P61565 698 aa15.4■□□□□ 0.06
HDAC3-213ENST00000492506 RBL2Q08999 1139 aa15.4■□□□□ 0.06
HDAC3-213ENST00000492506 VPS53Q5VIR6 699 aa15.4■□□□□ 0.06
HDAC3-213ENST00000492506 OTUD7AQ8TE49 926 aaPredicted RBP15.4■□□□□ 0.06
HDAC3-213ENST00000492506 GPCPD1Q9NPB8 672 aa15.4■□□□□ 0.06
HDAC3-213ENST00000492506 NOD1Q9Y239 953 aa15.4■□□□□ 0.06
HDAC3-213ENST00000492506 ATG2AQ2TAZ0 1938 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 TOP1P11387 765 aaKnown RBP15.39■□□□□ 0.05
HDAC3-213ENST00000492506 SELPP16109 830 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 CNKSR3Q6P9H4 555 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 LRRC8DQ7L1W4 858 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 FAM178BQ8IXR5 827 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.39■□□□□ 0.05
HDAC3-213ENST00000492506 AFG1LQ8WV93 481 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 FSD1Q9BTV5 496 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 UBE2ZQ9H832 354 aaPredicted RBP15.39■□□□□ 0.05
HDAC3-213ENST00000492506 NLRC5Q86WI3 1866 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 WDR19Q8NEZ3 1342 aa15.39■□□□□ 0.05
HDAC3-213ENST00000492506 LINC01553A4QN01 128 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 MMP3P08254 477 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 PDHBP11177 359 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 NCLP19338 710 aaKnown RBP15.38■□□□□ 0.05
HDAC3-213ENST00000492506 CHMP4BP1P59074 171 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 ARHGAP1Q07960 439 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 BECN1Q14457 450 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 LEXMQ3ZCV2 418 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 TRAF7Q6Q0C0 670 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 CCDC155Q8N6L0 562 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 RAD9AQ99638 391 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 ZBED2Q9BTP6 218 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 TCP11L1Q9NUJ3 509 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 MTUS1Q9ULD2 1270 aa15.38■□□□□ 0.05
HDAC3-213ENST00000492506 ABHD14A-ACY1A0A1B0GW23 586 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 SNHG28P0DPA3 235 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 CKBP12277 381 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 TERF1P54274 439 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 ZNF543Q08ER8 600 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 ALX1Q15699 326 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 GJD3Q8N144 294 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 RGS22Q8NE09 1264 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 TGS1Q96RS0 853 aaKnown RBP15.37■□□□□ 0.05
HDAC3-213ENST00000492506 MPHOSPH6Q99547 160 aaKnown RBP15.37■□□□□ 0.05
HDAC3-213ENST00000492506 RRAGDQ9NQL2 400 aaPredicted RBP15.37■□□□□ 0.05
HDAC3-213ENST00000492506 GTF2IRD1Q9UHL9 959 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 PNMA2Q9UL42 364 aa15.37■□□□□ 0.05
HDAC3-213ENST00000492506 PRR33A8MZF0 331 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 PARNO95453 639 aaKnown RBP15.36■□□□□ 0.05
HDAC3-213ENST00000492506 MKRN4PQ13434 485 aaPredicted RBP15.36■□□□□ 0.05
HDAC3-213ENST00000492506 MBTPS1Q14703 1052 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 LY6KQ17RY6 165 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 TRIM71Q2Q1W2 868 aaKnown RBP15.36■□□□□ 0.05
HDAC3-213ENST00000492506 TBC1D5Q92609 795 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 WNT8BQ93098 351 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 HDAC6Q9UBN7 1215 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 RCAN3Q9UKA8 241 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 ZNF318Q5VUA4 2279 aa15.36■□□□□ 0.05
HDAC3-213ENST00000492506 MYO7AQ13402 2215 aa15.35■□□□□ 0.05
HDAC3-213ENST00000492506 GH1P01241 217 aa15.35■□□□□ 0.05
HDAC3-213ENST00000492506 IL9P15248 144 aa15.35■□□□□ 0.05
HDAC3-213ENST00000492506 KCNA5P22460 613 aa15.35■□□□□ 0.05
HDAC3-213ENST00000492506 CENPQQ7L2Z9 268 aaPredicted RBP15.35■□□□□ 0.05
HDAC3-213ENST00000492506 MTERF4Q7Z6M4 381 aaKnown RBP15.35■□□□□ 0.05
HDAC3-213ENST00000492506 ALYREFQ86V81 257 aaKnown RBP15.35■□□□□ 0.05
HDAC3-213ENST00000492506 COL20A1Q9P218 1284 aa15.35■□□□□ 0.05
HDAC3-213ENST00000492506 SALL3Q9BXA9 1300 aa15.35■□□□□ 0.05
HDAC3-213ENST00000492506 RALGAPA2Q2PPJ7 1873 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 B4DLN1 442 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 HAS3O00219 553 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 FGAP02671 866 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 CASTP20810 708 aaKnown RBP15.34■□□□□ 0.05
HDAC3-213ENST00000492506 MRPL12P52815 198 aaKnown RBP15.34■□□□□ 0.05
HDAC3-213ENST00000492506 IKBKEQ14164 716 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 HIC1Q14526 733 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 RRP12Q5JTH9 1297 aaKnown RBP15.34■□□□□ 0.05
HDAC3-213ENST00000492506 ZNF618Q5T7W0 954 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.34■□□□□ 0.05
HDAC3-213ENST00000492506 SEPT14Q6ZU15 432 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 SYTL5Q8TDW5 730 aaPredicted RBP15.34■□□□□ 0.05
HDAC3-213ENST00000492506 EMID1Q96A84 441 aaPredicted RBP15.34■□□□□ 0.05
HDAC3-213ENST00000492506 TAAR1Q96RJ0 339 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 C17orf80Q9BSJ5 609 aa15.34■□□□□ 0.05
HDAC3-213ENST00000492506 GRXCR2A6NFK2 248 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 EFCAB14O75071 495 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 PSEN2P49810 448 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 HTRA4P83105 476 aaPredicted RBP15.33■□□□□ 0.04
HDAC3-213ENST00000492506 PTK7Q13308 1070 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 USH1GQ495M9 461 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 PTCRAQ6ISU1 281 aaPredicted RBP15.33■□□□□ 0.04
HDAC3-213ENST00000492506 FAM117BQ6P1L5 589 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 CHST3Q7LGC8 479 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 NEK9Q8TD19 979 aa15.33■□□□□ 0.04
HDAC3-213ENST00000492506 SP7Q8TDD2 431 aaPredicted RBP15.33■□□□□ 0.04
HDAC3-213ENST00000492506 TTC14Q96N46 770 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms