RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 MAP3K21Q5TCX8 1036 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 PDXDC2PQ6P474 469 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 SEPT12Q8IYM1 358 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 WDR62O43379 1518 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 TTC4O95801 387 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 STX1BP61266 288 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 CACNB1Q02641 598 aaPredicted RBP14.28□□□□□ -0.12
COL6A3-212ENST00000491769 TBCCQ15814 346 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 GPATCH4Q5T3I0 446 aaKnown RBP14.28□□□□□ -0.12
COL6A3-212ENST00000491769 GDAP1L1Q96MZ0 367 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 RPF1Q9H9Y2 349 aaKnown RBP14.28□□□□□ -0.12
COL6A3-212ENST00000491769 ZBTB7AO95365 584 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 CIITAP33076 1130 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 ANGPTL8Q6UXH0 198 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 YAF2Q8IY57 180 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 IQCDQ96DY2 449 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 CABS1Q96KC9 395 aa14.28□□□□□ -0.12
COL6A3-212ENST00000491769 SUCLA2Q9P2R7 463 aaPredicted RBP14.28□□□□□ -0.12
COL6A3-212ENST00000491769 ARMCX2Q7L311 632 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 CATSPER4Q7RTX7 472 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 TMC4Q7Z404 712 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.27□□□□□ -0.12
COL6A3-212ENST00000491769 RPGRIP1Q96KN7 1286 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 TYW1Q9NV66 732 aaKnown RBP14.27□□□□□ -0.12
COL6A3-212ENST00000491769 ZMYM6O95789 1325 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 MED7O43513 233 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 SNAP25P60880 206 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 NAA35Q5VZE5 725 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 ZNF341Q9BYN7 854 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 MEIS1O00470 390 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 BBOX1O75936 387 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 GNAT1P11488 350 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 PHKA1P46020 1223 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 EXOC3L4Q17RC7 722 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 ARHGEF18Q6ZSZ5 1173 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 C10orf67Q8IYJ2 551 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 WHAMMQ8TF30 809 aa14.27□□□□□ -0.12
COL6A3-212ENST00000491769 CPP00450 1065 aa14.27□□□□□ -0.13
COL6A3-212ENST00000491769 INHBAP08476 426 aa14.27□□□□□ -0.13
COL6A3-212ENST00000491769 PMLP29590 882 aa14.27□□□□□ -0.13
COL6A3-212ENST00000491769 SFMBT1Q9UHJ3 866 aa14.27□□□□□ -0.13
COL6A3-212ENST00000491769 POC1B-GALNT4F8VUJ3 575 aa14.27□□□□□ -0.13
COL6A3-212ENST00000491769 DYNLL1P63167 89 aaKnown RBP14.27□□□□□ -0.13
COL6A3-212ENST00000491769 URGCPQ8TCY9 931 aa14.27□□□□□ -0.13
COL6A3-212ENST00000491769 RNF10Q8N5U6 811 aaKnown RBP14.26□□□□□ -0.13
COL6A3-212ENST00000491769 KANSL2Q9H9L4 492 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 MYO1FO00160 1098 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 ESRRBO95718 433 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 SCN4BQ8IWT1 228 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 CARD14Q9BXL6 1004 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 MED23Q9ULK4 1368 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 RPN1P04843 607 aaKnown RBP14.26□□□□□ -0.13
COL6A3-212ENST00000491769 KRBA2Q6ZNG9 492 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 KCTD6Q8NC69 237 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 ITSN2Q9NZM3 1697 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 ATP10BO94823 1461 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 HNRNPCL2B2RXH8 293 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 HNRNPCL1O60812 293 aaKnown RBP14.26□□□□□ -0.13
COL6A3-212ENST00000491769 EIF2AK2P19525 551 aaKnown RBP14.26□□□□□ -0.13
COL6A3-212ENST00000491769 NKX1-1Q15270 411 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-212ENST00000491769 OR6B3Q8NGW1 331 aa14.26□□□□□ -0.13
COL6A3-212ENST00000491769 CLIC2O15247 247 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 PHEXP78562 749 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 GOLGA8FQ08AF8 430 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 GOLGA8DPQ0D2H9 430 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 PDCD6IPQ8WUM4 868 aaKnown RBP14.25□□□□□ -0.13
COL6A3-212ENST00000491769 MRPL46Q9H2W6 279 aaKnown RBP14.25□□□□□ -0.13
COL6A3-212ENST00000491769 SUGT1Q9Y2Z0 365 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 PIK3C2GO75747 1445 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 EIF2AK4Q9P2K8 1649 aaKnown RBP14.25□□□□□ -0.13
COL6A3-212ENST00000491769 SYNDIG1LA6NDD5 238 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 KRT1P04264 644 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 ADD1P35611 737 aaKnown RBP14.25□□□□□ -0.13
COL6A3-212ENST00000491769 ZNF75DP51815 510 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 DARS2Q6PI48 645 aaKnown RBP14.25□□□□□ -0.13
COL6A3-212ENST00000491769 EXT2Q93063 718 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 MMP10P09238 476 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 PFKFB1P16118 471 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 MAPK4P31152 587 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 WDR11Q9BZH6 1224 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 NUP160Q12769 1436 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 NPR1P16066 1061 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 PSMC2P35998 433 aaKnown RBP14.25□□□□□ -0.13
COL6A3-212ENST00000491769 RASSF2P50749 326 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 GPR101Q96P66 508 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-212ENST00000491769 ARL13BQ3SXY8 428 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 RASGRP4Q8TDF6 673 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 ERO1AQ96HE7 468 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 RMDN2Q96LZ7 410 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 NUDCD1Q96RS6 583 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 USH1CQ9Y6N9 552 aa14.25□□□□□ -0.13
COL6A3-212ENST00000491769 PRAG1Q86YV5 1406 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 MCF2LO15068 1137 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 COBLO75128 1261 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 CALN1Q9BXU9 219 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SEC31BQ9NQW1 1179 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SPECC1L-ADORA2AF8WAN1 911 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 CHL1O00533 1208 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 SERPINB6P35237 376 aa14.24□□□□□ -0.13
COL6A3-212ENST00000491769 NNMTP40261 264 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms