RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ACBD5Q5T8D3 534 aaPredicted RBP5.16□□□□□ -1.58
CPSF3-205ENST00000489629 NT5DC1Q5TFE4 455 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 DENND5AQ6IQ26 1287 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 RCBTB1Q8NDN9 531 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 DIO2Q92813 273 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 SYT3Q9BQG1 590 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 GORASP1Q9BQQ3 440 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.16□□□□□ -1.58
CPSF3-205ENST00000489629 ZNF408Q9H9D4 720 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 FBXL7Q9UJT9 491 aa5.16□□□□□ -1.58
CPSF3-205ENST00000489629 MEFVO15553 781 aaPredicted RBP5.15□□□□□ -1.59
CPSF3-205ENST00000489629 DDAH1O94760 285 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 CPP00450 1065 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 SNRPB2P08579 225 aaKnown RBP5.15□□□□□ -1.59
CPSF3-205ENST00000489629 CYP2C8P10632 490 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 BCL6P41182 706 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 ECI1P42126 302 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 SARSP49591 514 aaKnown RBP5.15□□□□□ -1.59
CPSF3-205ENST00000489629 NFKB2Q00653 900 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 KCNAB2Q13303 367 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 FXNQ16595 210 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 MROH9Q5TGP6 573 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 CEP68Q76N32 757 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 MCF2L2Q86YR7 1114 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 FAM26EQ8N5C1 309 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 ZBTB8AQ96BR9 441 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 C1orf159Q96HA4 380 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 CCDC140Q96MF4 163 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 C11orf84Q9BUA3 381 aaPredicted RBP5.15□□□□□ -1.59
CPSF3-205ENST00000489629 AP5M1Q9H0R1 490 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 BTG4Q9NY30 223 aa5.15□□□□□ -1.59
CPSF3-205ENST00000489629 GJB6O95452 261 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 LCP1P13796 627 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 THBS2P35442 1172 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 GTF2A2P52657 109 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 SMAD4Q13485 552 aaKnown RBP5.14□□□□□ -1.59
CPSF3-205ENST00000489629 GNL2Q13823 731 aaKnown RBP5.14□□□□□ -1.59
CPSF3-205ENST00000489629 ETV3LQ6ZN32 361 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 ZNF761Q86XN6 746 aaPredicted RBP5.14□□□□□ -1.59
CPSF3-205ENST00000489629 FAM126BQ8IXS8 530 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 LNPKQ9C0E8 428 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 PCDH18Q9HCL0 1135 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 NTMQ9P121 344 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 LRP2BPQ9P2M1 347 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 PALD1Q9ULE6 856 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 DUSP10Q9Y6W6 482 aa5.14□□□□□ -1.59
CPSF3-205ENST00000489629 LTBRP36941 435 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 ARID5AQ03989 594 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 EFEMP1Q12805 493 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 SLC10A6Q3KNW5 377 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 PRR31Q5SQ13 230 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 SLC35F1Q5T1Q4 408 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 ERICH6BQ5W0A0 696 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 TTLL7Q6ZT98 887 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 MILR1Q7Z6M3 343 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 FERMT3Q86UX7 667 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 PPIL6Q8IXY8 311 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 KYQ8NBH2 561 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 SLC43A3Q8NBI5 491 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 TMEM145Q8NBT3 493 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 ZNF428Q96B54 188 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 TRMT2BQ96GJ1 504 aaKnown RBP5.13□□□□□ -1.59
CPSF3-205ENST00000489629 GMLQ99445 158 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 KRTAP4-5Q9BYR2 181 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 EPN3Q9H201 632 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 USP40Q9NVE5 1235 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 ZNF652Q9Y2D9 606 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 NPFFR2Q9Y5X5 522 aa5.13□□□□□ -1.59
CPSF3-205ENST00000489629 H7BY64 318 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 SMARCA5O60264 1052 aaPredicted RBP5.12□□□□□ -1.59
CPSF3-205ENST00000489629 TADA3O75528 432 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 RPL13P26373 211 aaKnown RBP5.12□□□□□ -1.59
CPSF3-205ENST00000489629 GRIA2P42262 883 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 ITGA1P56199 1179 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 LSAMPQ13449 338 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 CR1LQ2VPA4 569 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 EMC4Q5J8M3 183 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 CD300LDQ6UXZ3 194 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 EEPD1Q7L9B9 569 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 PRRT2Q7Z6L0 340 aaPredicted RBP5.12□□□□□ -1.59
CPSF3-205ENST00000489629 CELF2-AS1Q8N7Q2 184 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 ADAMTS17Q8TE56 1095 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 TMEM169Q96HH4 297 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 BDH2Q9BUT1 245 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 CDIP1Q9H305 208 aa5.12□□□□□ -1.59
CPSF3-205ENST00000489629 A0A1W2PQU0 124 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 MYO1BO43795 1136 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 KCNJ6P48051 423 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 GJA9P57773 515 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 PPP2R2AP63151 447 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 PLP2Q04941 152 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 MAP4K2Q12851 820 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 UBXN11Q5T124 520 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 STK32CQ86UX6 486 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 HNRNPLLQ8WVV9 542 aaKnown RBP5.11□□□□□ -1.59
CPSF3-205ENST00000489629 CNOT11Q9UKZ1 510 aaKnown RBP5.11□□□□□ -1.59
CPSF3-205ENST00000489629 JAG2Q9Y219 1238 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 PCDHA2Q9Y5H9 948 aa5.11□□□□□ -1.59
CPSF3-205ENST00000489629 TCRBV5S2A0A599 114 aa5.1□□□□□ -1.59
CPSF3-205ENST00000489629 KLF4O43474 513 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms