RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	USP17L19	D6RCP7	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L20	D6RJB6	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	KIF2A	O00139	706 aa	Predicted RBP	12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	PSMA7	O14818	248 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	SLC37A4	O43826	429 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	CD44	P16070	742 aa	Known RBP	12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	ARHGAP4	P98171	946 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L24	Q0WX57	530 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	GRB10	Q13322	594 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	SHROOM1	Q2M3G4	852 aa	Predicted RBP	12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	NBPF9	Q3BBW0	867 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	TMEM119	Q4V9L6	283 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	FOXR2	Q6PJQ5	311 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	USP17L6P	Q6QN14	398 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	ERMN	Q8TAM6	284 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	ACER1	Q8TDN7	264 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	NELFB	Q8WX92	580 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	STAM	Q92783	540 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	HAS1	Q92839	578 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	NAP1L5	Q96NT1	182 aa	Predicted RBP	12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	MED15	Q96RN5	788 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	GLIS2	Q9BZE0	524 aa	Predicted RBP	12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	KCNMB3	Q9NPA1	279 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	EXOC1	Q9NV70	894 aa		12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	MAP3K20	Q9NYL2	800 aa	Known RBP	12.15	□□□□□ -0.46
ITSN1-231	ENST00000489261	GCOM1	H8Y6P7	765 aa	Predicted RBP	12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	WDR46	O15213	610 aa	Known RBP	12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	FGFR1OP	O95684	399 aa	Known RBP	12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	TPM2	P07951	284 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	POLR2M	P0CAP2	368 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	CASP1	P29466	404 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	PRCP	P42785	496 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	ECE1	P42892	770 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	USP14	P54578	494 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	LRMP	Q12912	555 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	TBX2	Q13207	712 aa	Predicted RBP	12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	FAM83B	Q5T0W9	1011 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	SPECC1L	Q69YQ0	1117 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	KLHL10	Q6JEL2	608 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	UNC13D	Q70J99	1090 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	MIGA2	Q7L4E1	593 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	FCHSD1	Q86WN1	690 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	FAM114A1	Q8IWE2	563 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	SNX29	Q8TEQ0	813 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	LARP4B	Q92615	738 aa	Known RBP	12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	RAD54L	Q92698	747 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	PNMA5	Q96PV4	448 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	NUP88	Q99567	741 aa	Predicted RBP	12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	THAP9	Q9H5L6	903 aa		12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	SAMSN1	Q9NSI8	373 aa	Known RBP	12.14	□□□□□ -0.47
ITSN1-231	ENST00000489261	CCNE1	P24864	410 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	EEF1G	P26641	437 aa	Known RBP	12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	VEGFB	P49765	207 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	ASIC1	P78348	528 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	CCZ1B	P86790	482 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	CCZ1	P86791	482 aa	Predicted RBP	12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	PDE4D	Q08499	809 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	HAUS3	Q68CZ6	603 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	APOBEC3F	Q8IUX4	373 aa	Known RBP	12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	TRMT44	Q8IYL2	757 aa	Known RBP	12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	PRPF38A	Q8NAV1	312 aa	Known RBP	12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	TEPSIN	Q96N21	525 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	MAF1	Q9H063	256 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	KIAA1683	Q9H0B3	1180 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	TMX1	Q9H3N1	280 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	BLOC1S4	Q9NUP1	217 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	ADD3	Q9UEY8	706 aa	Known RBP	12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	CTNND2	Q9UQB3	1225 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	PPP2R3B	Q9Y5P8	575 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	TLL2	Q9Y6L7	1015 aa		12.13	□□□□□ -0.47
ITSN1-231	ENST00000489261	ASTN2	O75129	1339 aa	Predicted RBP	12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	ITIH6	Q6UXX5	1313 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	PITPNM2	Q9BZ72	1349 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	KIF20A	O95235	890 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	CELF2	O95319	508 aa	Known RBP	12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	TPM1	P09493	284 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	MUT	P22033	750 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	ZNF76	P36508	570 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	CCT6A	P40227	531 aa	Known RBP	12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	STX17	P56962	302 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	TRIM14	Q14142	442 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	DEFB115	Q30KQ5	88 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	ARMCX5	Q6P1M9	558 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	MCF2L2	Q86YR7	1114 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	SPICE1	Q8N0Z3	855 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	CCDC51	Q96ER9	411 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	PLIN2	Q99541	437 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	WDR18	Q9BV38	432 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	ZNF341	Q9BYN7	854 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	AS3MT	Q9HBK9	375 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	GGA3	Q9NZ52	723 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	MAGEC2	Q9UBF1	373 aa	Predicted RBP	12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	ZNF112	Q9UJU3	913 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	ABT1	Q9ULW3	272 aa	Known RBP	12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	PAXBP1	Q9Y5B6	917 aa		12.12	□□□□□ -0.47
ITSN1-231	ENST00000489261	PAPPA2	Q9BXP8	1791 aa		12.11	□□□□□ -0.47
ITSN1-231	ENST00000489261	STX10	O60499	249 aa		12.11	□□□□□ -0.47
ITSN1-231	ENST00000489261	ICAM1	P05362	532 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms