RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PFDN2Q9UHV9 154 aa7.51□□□□□ -1.21
PTPN4-212ENST00000488896 COA3Q9Y2R0 106 aaPredicted RBP7.51□□□□□ -1.21
PTPN4-212ENST00000488896 BLACEA4D250 179 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 CAPNS1P04632 268 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 MAP4K2Q12851 820 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 LSAMPQ13449 338 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 MROH9Q5TGP6 573 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 YOD1Q5VVQ6 348 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-212ENST00000488896 MILR1Q7Z6M3 343 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 ST13P5Q8NFI4 369 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-212ENST00000488896 SGSM3Q96HU1 749 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 PALD1Q9ULE6 856 aa7.5□□□□□ -1.21
PTPN4-212ENST00000488896 RBM10P98175 930 aaKnown RBP7.49□□□□□ -1.21
PTPN4-212ENST00000488896 SPATC1Q76KD6 591 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 B3GNT8Q7Z7M8 397 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 MARCH10Q8NA82 808 aaPredicted RBP7.49□□□□□ -1.21
PTPN4-212ENST00000488896 FNIP1Q8TF40 1166 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 SEC14L1Q92503 715 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 DDX11Q96FC9 970 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 C8orf37Q96NL8 207 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 SYT3Q9BQG1 590 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 PHF20Q9BVI0 1012 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 PARD6AQ9NPB6 346 aa7.49□□□□□ -1.21
PTPN4-212ENST00000488896 A0A1B0GTL3 188 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 FFAR3O14843 346 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 PDPK1O15530 556 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 MSCO60682 206 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 PABPC1P11940 636 aaKnown RBP7.48□□□□□ -1.21
PTPN4-212ENST00000488896 CACNB2Q08289 660 aaPredicted RBP7.48□□□□□ -1.21
PTPN4-212ENST00000488896 MTERF2Q49AM1 385 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 KCNT2Q6UVM3 1135 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 NSMFQ6X4W1 530 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 TTLL10Q6ZVT0 673 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 LRRC47Q8N1G4 583 aaKnown RBP7.48□□□□□ -1.21
PTPN4-212ENST00000488896 FAM26EQ8N5C1 309 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 LINC01356Q8N9X3 169 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 SYT8Q8NBV8 401 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 NOX5Q96PH1 765 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 X6R8D5 127 aa7.48□□□□□ -1.21
PTPN4-212ENST00000488896 TRAV20A0A0B4J274 112 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 HOXA5P20719 270 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 SMAD4Q13485 552 aaKnown RBP7.47□□□□□ -1.21
PTPN4-212ENST00000488896 TESK1Q15569 626 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 LCE4AQ5TA78 99 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 CD300LDQ6UXZ3 194 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 ETV3LQ6ZN32 361 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 STK32CQ86UX6 486 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 RIOX2Q8IUF8 465 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 ZDHHC14Q8IZN3 488 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 FEZF2Q8TBJ5 459 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 ZNF526Q8TF50 670 aaPredicted RBP7.47□□□□□ -1.21
PTPN4-212ENST00000488896 OSBP2Q969R2 916 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 KCNC2Q96PR1 638 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 YIPF4Q9BSR8 244 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 SPATA9Q9BWV2 254 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 JAM3Q9BX67 310 aa7.47□□□□□ -1.21
PTPN4-212ENST00000488896 PPARGC1AQ9UBK2 798 aaKnown RBP7.47□□□□□ -1.21
PTPN4-212ENST00000488896 H7BY64 318 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 SASH1O94885 1247 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 C8BP07358 591 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 CYP2C8P10632 490 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 FGFR1P11362 822 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 STAT5AP42229 794 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 SLC6A11P48066 632 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 IFRD2Q12894 506 aaPredicted RBP7.46□□□□□ -1.22
PTPN4-212ENST00000488896 Q8N1Y9 231 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 TP53I13Q8NBR0 393 aaPredicted RBP7.46□□□□□ -1.22
PTPN4-212ENST00000488896 CPA5Q8WXQ8 436 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 ZBTB8AQ96BR9 441 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 GPR27Q9NS67 375 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 MSRB2Q9Y3D2 182 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 NPFFR2Q9Y5X5 522 aa7.46□□□□□ -1.22
PTPN4-212ENST00000488896 DGKIO75912 1065 aa7.45□□□□□ -1.22
PTPN4-212ENST00000488896 SSRP1Q08945 709 aaKnown RBP7.45□□□□□ -1.22
PTPN4-212ENST00000488896 NTRK3Q16288 839 aa7.45□□□□□ -1.22
PTPN4-212ENST00000488896 VWA3BQ502W6 1294 aa7.45□□□□□ -1.22
PTPN4-212ENST00000488896 STEAP3Q658P3 488 aa7.45□□□□□ -1.22
PTPN4-212ENST00000488896 HIRIP3Q9BW71 556 aaPredicted RBP7.45□□□□□ -1.22
PTPN4-212ENST00000488896 OTOL1A6NHN0 477 aaPredicted RBP7.44□□□□□ -1.22
PTPN4-212ENST00000488896 HGSO14964 777 aaPredicted RBP7.44□□□□□ -1.22
PTPN4-212ENST00000488896 DIAPH1O60610 1272 aaKnown RBP7.44□□□□□ -1.22
PTPN4-212ENST00000488896 LILRA6Q6PI73 481 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 PMFBP1Q8TBY8 1022 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 DCAF4Q8WV16 495 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 KCNJ15Q99712 375 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 CDC6Q99741 560 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 EPB41L1Q9H4G0 881 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 SIRPGQ9P1W8 387 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 PCDHB4Q9Y5E5 795 aa7.44□□□□□ -1.22
PTPN4-212ENST00000488896 SLURP1P55000 103 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 CTSWP56202 376 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 HTRA3P83110 453 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 RASGRF1Q13972 1273 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 CHRNA2Q15822 529 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 NBPF6Q5VWK0 638 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 SP8Q8IXZ3 490 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 ARRDC4Q8NCT1 418 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.43□□□□□ -1.22
PTPN4-212ENST00000488896 NBPF4Q96M43 638 aa7.43□□□□□ -1.22
PTPN4-212ENST00000488896 GORASP1Q9BQQ3 440 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms