RNA–Protein interactions for RNA: ENST00000487615.5

TRA2B-214, Transcript of transformer 2 beta homolog, humanhuman

TSL 1 (best)

Gene TRA2B, Length 4,485 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-214ENST00000487615 NBPF11Q86T75 865 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 MCF2L2Q86YR7 1114 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 GOLGA5Q8TBA6 731 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L15C9J2P7 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L13C9JLJ4 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L11C9JVI0 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L18D6R9N7 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L22D6RA61 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L17D6RBQ6 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L19D6RCP7 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L20D6RJB6 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L24Q0WX57 530 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 EXOC3L4Q17RC7 722 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 USP17L6PQ6QN14 398 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 IFT20Q8IY31 132 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 ADGRF4Q8IZF3 695 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 ANKRD13CQ8N6S4 541 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 IFT74Q96LB3 600 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 IWS1Q96ST2 819 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 CEP104O60308 925 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 TDP2O95551 362 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 EEF2P13639 858 aaKnown RBP13.01□□□□□ -0.33
TRA2B-214ENST00000487615 CCDC26Q8TAB7 109 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 FNBP1Q96RU3 617 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 FAM107BQ9H098 131 aa13.01□□□□□ -0.33
TRA2B-214ENST00000487615 TDRD3Q9H7E2 651 aaKnown RBP13.01□□□□□ -0.33
TRA2B-214ENST00000487615 AFDNP55196 1824 aaKnown RBP13.01□□□□□ -0.33
TRA2B-214ENST00000487615 BAZ2BQ9UIF8 2168 aaKnown RBP13□□□□□ -0.33
TRA2B-214ENST00000487615 STXBP3O00186 592 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 MEIS1O00470 390 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 ECE2O60344 883 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 CCDC93Q567U6 631 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 FBXO38Q6PIJ6 1188 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 SMCR8Q8TEV9 937 aaPredicted RBP13□□□□□ -0.33
TRA2B-214ENST00000487615 TRERF1Q96PN7 1200 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 NAP1L3Q99457 506 aaPredicted RBP13□□□□□ -0.33
TRA2B-214ENST00000487615 WDR11Q9BZH6 1224 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 CTNNA2P26232 953 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 PEX26Q7Z412 305 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 NLRX1Q86UT6 975 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 NBPF3Q9H094 633 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 NHEJ1Q9H9Q4 299 aaPredicted RBP13□□□□□ -0.33
TRA2B-214ENST00000487615 BUB1O43683 1085 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 GAP43P17677 238 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 UBXN2AP68543 259 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 QRICH1Q2TAL8 776 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 ODR4Q5SWX8 454 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 SYCE1Q8N0S2 351 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 FAM76AQ8TAV0 307 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 ADGRG1Q9Y653 693 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 LRRC37A3O60309 1634 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 RXRBP28702 533 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 ARHGAP44Q17R89 818 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 TRIM9Q9C026 710 aa13□□□□□ -0.33
TRA2B-214ENST00000487615 ABCC6O95255 1503 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 TESPA1A2RU30 521 aaPredicted RBP12.99□□□□□ -0.33
TRA2B-214ENST00000487615 ZNF543Q08ER8 600 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 BIRC3Q13489 604 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 RAD54LQ92698 747 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 KIFAP3Q92845 792 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 ZNF577Q9BSK1 485 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 ZMYND12Q9H0C1 365 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 ADD3Q9UEY8 706 aaKnown RBP12.99□□□□□ -0.33
TRA2B-214ENST00000487615 PNMA2Q9UL42 364 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.99□□□□□ -0.33
TRA2B-214ENST00000487615 HOXA13P31271 388 aaPredicted RBP12.99□□□□□ -0.33
TRA2B-214ENST00000487615 CYP27A1Q02318 531 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 MICALCLQ6ZW33 695 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 LIMA1Q9UHB6 759 aaKnown RBP12.99□□□□□ -0.33
TRA2B-214ENST00000487615 F5H6K3 240 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 K7ENM7 598 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 KLRC3Q07444 240 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 NAA30Q147X3 362 aaPredicted RBP12.99□□□□□ -0.33
TRA2B-214ENST00000487615 RCSD1Q6JBY9 416 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 SND1Q7KZF4 910 aaKnown RBP eCLIP12.99□□□□□ -0.338e-10■□□□□ 9.3
TRA2B-214ENST00000487615 MTUS1Q9ULD2 1270 aa12.99□□□□□ -0.33
TRA2B-214ENST00000487615 CCDC151A5D8V7 595 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 ATP8B1O43520 1251 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 PDHBP11177 359 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 NF2P35240 595 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 CLCN6P51797 869 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 SNAP25P60880 206 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 ARHGAP4P98171 946 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 RASSF7Q02833 373 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 NR1I3Q14994 352 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 PKN1Q16512 942 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 WDR44Q5JSH3 913 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 FNBP4Q8N3X1 1017 aaPredicted RBP12.98□□□□□ -0.33
TRA2B-214ENST00000487615 U2AF1L4Q8WU68 220 aaKnown RBP12.98□□□□□ -0.33
TRA2B-214ENST00000487615 TTC26A0AVF1 554 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 SPOPO43791 374 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 PAK2Q13177 524 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 SEL1L2Q5TEA6 688 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 DCAF15Q66K64 600 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 PPP4R3CPQ6ZMV5 832 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 ADSSL1Q8N142 457 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 GUF1Q8N442 669 aaKnown RBP12.98□□□□□ -0.33
TRA2B-214ENST00000487615 TMEM60Q9H2L4 133 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 CTTNBP2NLQ9P2B4 639 aa12.98□□□□□ -0.33
TRA2B-214ENST00000487615 MAD2L2Q9UI95 211 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms