RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 RGS22Q8NE09 1264 aa18.06■□□□□ 0.48
MCF2L-228ENST00000487354 UBE2ZQ9H832 354 aaPredicted RBP18.06■□□□□ 0.48
MCF2L-228ENST00000487354 GTF2IRD1Q9UHL9 959 aa18.06■□□□□ 0.48
MCF2L-228ENST00000487354 MTUS1Q9ULD2 1270 aa18.06■□□□□ 0.48
MCF2L-228ENST00000487354 NOD1Q9Y239 953 aa18.06■□□□□ 0.48
MCF2L-228ENST00000487354 WDFY4Q6ZS81 3184 aa18.06■□□□□ 0.48
MCF2L-228ENST00000487354 ZMYM6O95789 1325 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 A0A0D9SFI3 127 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 CHMP4BP1P59074 171 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 HIC1Q14526 733 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 RRP12Q5JTH9 1297 aaKnown RBP18.05■□□□□ 0.48
MCF2L-228ENST00000487354 TBC1D10CQ8IV04 446 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 CCDC155Q8N6L0 562 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.05■□□□□ 0.48
MCF2L-228ENST00000487354 FAM227BQ96M60 508 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 COL4A6Q14031 1691 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 RALGAPA2Q2PPJ7 1873 aa18.05■□□□□ 0.48
MCF2L-228ENST00000487354 C5orf42Q9H799 3197 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 HAS3O00219 553 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 GOLGA8HP0CJ92 632 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 LEXMQ3ZCV2 418 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 USH1GQ495M9 461 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 ZNF589Q86UQ0 364 aaPredicted RBP18.04■□□□□ 0.48
MCF2L-228ENST00000487354 FAM178BQ8IXR5 827 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 SYTL5Q8TDW5 730 aaPredicted RBP18.04■□□□□ 0.48
MCF2L-228ENST00000487354 TAAR1Q96RJ0 339 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 TGS1Q96RS0 853 aaKnown RBP18.04■□□□□ 0.48
MCF2L-228ENST00000487354 HDAC6Q9UBN7 1215 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 PNMA2Q9UL42 364 aa18.04■□□□□ 0.48
MCF2L-228ENST00000487354 F2P00734 622 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 GH1P01241 217 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 IL9P15248 144 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 SEPT14Q6ZU15 432 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 MPHOSPH6Q99547 160 aaKnown RBP18.03■□□□□ 0.48
MCF2L-228ENST00000487354 RAD9AQ99638 391 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 HELLSQ9NRZ9 838 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 TOMM22Q9NS69 142 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 DOCK5Q9H7D0 1870 aa18.03■□□□□ 0.48
MCF2L-228ENST00000487354 ZNF318Q5VUA4 2279 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 NEDD4P46934 1319 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 ABHD14A-ACY1A0A1B0GW23 586 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 ZNF286BP0CG31 522 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 HSPD1P10809 573 aaKnown RBP18.02■□□□□ 0.48
MCF2L-228ENST00000487354 HOXD8P13378 290 aaPredicted RBP18.02■□□□□ 0.48
MCF2L-228ENST00000487354 PSEN2P49810 448 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 HAND2P61296 217 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 ZNF200P98182 395 aaPredicted RBP18.02■□□□□ 0.48
MCF2L-228ENST00000487354 CDC37Q16543 378 aaPredicted RBP18.02■□□□□ 0.48
MCF2L-228ENST00000487354 ZNF618Q5T7W0 954 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.02■□□□□ 0.48
MCF2L-228ENST00000487354 EMID1Q96A84 441 aaPredicted RBP18.02■□□□□ 0.48
MCF2L-228ENST00000487354 C17orf80Q9BSJ5 609 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 ZBED2Q9BTP6 218 aa18.02■□□□□ 0.48
MCF2L-228ENST00000487354 DDX41Q9UJV9 622 aaKnown RBP18.02■□□□□ 0.48
MCF2L-228ENST00000487354 TRIOO75962 3097 aa18.02■□□□□ 0.47
MCF2L-228ENST00000487354 MYO7AQ13402 2215 aa18.01■□□□□ 0.47
MCF2L-228ENST00000487354 PARNO95453 639 aaKnown RBP18.01■□□□□ 0.47
MCF2L-228ENST00000487354 CHST3Q7LGC8 479 aa18.01■□□□□ 0.47
MCF2L-228ENST00000487354 SP7Q8TDD2 431 aaPredicted RBP18.01■□□□□ 0.47
MCF2L-228ENST00000487354 TTC14Q96N46 770 aa18.01■□□□□ 0.47
MCF2L-228ENST00000487354 UBA5Q9GZZ9 404 aa18.01■□□□□ 0.47
MCF2L-228ENST00000487354 OPLAHO14841 1288 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 RGS20O76081 388 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 CASTP20810 708 aaKnown RBP18■□□□□ 0.47
MCF2L-228ENST00000487354 KCNA5P22460 613 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 HTRA4P83105 476 aaPredicted RBP18■□□□□ 0.47
MCF2L-228ENST00000487354 PTK7Q13308 1070 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 MFSD10Q14728 455 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 FAM117BQ6P1L5 589 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 GJD3Q8N144 294 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 EVI5LQ96CN4 794 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 ALG1Q9BT22 464 aa18■□□□□ 0.47
MCF2L-228ENST00000487354 ABCB11O95342 1321 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 PRR33A8MZF0 331 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 B4DLN1 442 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 MRPL12P52815 198 aaKnown RBP17.99■□□□□ 0.47
MCF2L-228ENST00000487354 DGKDQ16760 1214 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 KIAA0753Q2KHM9 967 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 GPATCH4Q5T3I0 446 aaKnown RBP17.99■□□□□ 0.47
MCF2L-228ENST00000487354 PPTC7Q8NI37 304 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 NEK9Q8TD19 979 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 NSUN6Q8TEA1 469 aaKnown RBP17.99■□□□□ 0.47
MCF2L-228ENST00000487354 ZKSCAN3Q9BRR0 538 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 OSBPL7Q9BZF2 842 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 MAF1Q9H063 256 aa17.99■□□□□ 0.47
MCF2L-228ENST00000487354 GRXCR2A6NFK2 248 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 LGR5O75473 907 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 NMIQ13287 307 aaPredicted RBP17.98■□□□□ 0.47
MCF2L-228ENST00000487354 IKBKEQ14164 716 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 COL19A1Q14993 1142 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 STXBP2Q15833 593 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 QRICH1Q2TAL8 776 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 MCMDC2Q4G0Z9 681 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 ADGRF4Q8IZF3 695 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 C7orf31Q8N865 590 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 IWS1Q96ST2 819 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 RMDN3Q96TC7 470 aa17.98■□□□□ 0.47
MCF2L-228ENST00000487354 EFCAB14O75071 495 aa17.97■□□□□ 0.47
MCF2L-228ENST00000487354 EIF2AK2P19525 551 aaKnown RBP17.97■□□□□ 0.47
MCF2L-228ENST00000487354 HOXC8P31273 242 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms