RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 BAZ2BQ9UIF8 2168 aaKnown RBP20.38■□□□□ 0.85
COL6A1-204ENST00000486023 ZBTB43O43298 467 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 CCND2P30279 289 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 EPHB4P54760 987 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 LRIT3Q3SXY7 679 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 TSGA10IPQ3SY00 556 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 TMTC3Q6ZXV5 915 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 HEATR3Q7Z4Q2 680 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 SGMS1Q86VZ5 419 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 DHX37Q8IY37 1157 aaKnown RBP20.37■□□□□ 0.85
COL6A1-204ENST00000486023 SAMD3Q8N6K7 520 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 RTEL1Q9NZ71 1219 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 DDX41Q9UJV9 622 aaKnown RBP20.37■□□□□ 0.85
COL6A1-204ENST00000486023 TBX21Q9UL17 535 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 SNX14Q9Y5W7 946 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 LAMA3Q16787 3333 aa20.37■□□□□ 0.85
COL6A1-204ENST00000486023 LRRC37A2A6NM11 1700 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 A6NJR5 290 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 B4GALT4O60513 344 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 REC8O95072 547 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 HMGB1P09429 215 aaKnown RBP20.36■□□□□ 0.85
COL6A1-204ENST00000486023 SMARCA1P28370 1054 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 CYP2C18P33260 490 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 RTN1Q16799 776 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 NBPF20Q3BBV1 942 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 APOA5Q6Q788 366 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 Q6ZUG5 572 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 VSIG10LQ86VR7 867 aa20.36■□□□□ 0.85
COL6A1-204ENST00000486023 GOLGA8AA7E2F4 631 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 GOLGA8BA8MQT2 603 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 CD4P01730 458 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 HSPA4P34932 840 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 CCL23P55773 120 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 GHRHRQ02643 423 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 ARHGAP1Q07960 439 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 APOBRQ0VD83 1088 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 BLOC1S2Q6QNY1 142 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 Q7L0L9 218 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 SLC43A3Q8NBI5 491 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 GPKOWQ92917 476 aaPredicted RBP eCLIP20.35■□□□□ 0.85
COL6A1-204ENST00000486023 PSTPIP2Q9H939 334 aa20.35■□□□□ 0.85
COL6A1-204ENST00000486023 TRMT13Q9NUP7 481 aaKnown RBP20.35■□□□□ 0.85
COL6A1-204ENST00000486023 KPNA6O60684 536 aa20.34■□□□□ 0.85
COL6A1-204ENST00000486023 MMP3P08254 477 aa20.34■□□□□ 0.85
COL6A1-204ENST00000486023 ACRP10323 421 aa20.34■□□□□ 0.85
COL6A1-204ENST00000486023 CSF2RAP15509 400 aa20.34■□□□□ 0.85
COL6A1-204ENST00000486023 MFSD5Q6N075 450 aa20.34■□□□□ 0.85
COL6A1-204ENST00000486023 TMEM199Q8N511 208 aa20.34■□□□□ 0.85
COL6A1-204ENST00000486023 RNPC3Q96LT9 517 aaKnown RBP20.34■□□□□ 0.85
COL6A1-204ENST00000486023 ALDH8A1Q9H2A2 487 aaPredicted RBP20.34■□□□□ 0.85
COL6A1-204ENST00000486023 HIPK3Q9H422 1215 aa20.34■□□□□ 0.85
COL6A1-204ENST00000486023 RBM28Q9NW13 759 aaKnown RBP20.34■□□□□ 0.85
COL6A1-204ENST00000486023 MYH6P13533 1939 aa20.33■□□□□ 0.85
COL6A1-204ENST00000486023 UMODL1Q5DID0 1318 aa20.33■□□□□ 0.85
COL6A1-204ENST00000486023 RGS20O76081 388 aa20.33■□□□□ 0.85
COL6A1-204ENST00000486023 CYP2C9P11712 490 aa20.33■□□□□ 0.85
COL6A1-204ENST00000486023 CASTP20810 708 aaKnown RBP20.33■□□□□ 0.85
COL6A1-204ENST00000486023 LAMC2Q13753 1193 aa20.33■□□□□ 0.85
COL6A1-204ENST00000486023 UBE2SQ16763 222 aa20.33■□□□□ 0.85
COL6A1-204ENST00000486023 BRF1Q92994 677 aa20.33■□□□□ 0.85
COL6A1-204ENST00000486023 V9GY48 417 aaPredicted RBP20.33■□□□□ 0.85
COL6A1-204ENST00000486023 MEIS2O14770 477 aa20.32■□□□□ 0.84
COL6A1-204ENST00000486023 GGPS1O95749 300 aa20.32■□□□□ 0.84
COL6A1-204ENST00000486023 DGKDQ16760 1214 aa20.32■□□□□ 0.84
COL6A1-204ENST00000486023 DEFB123Q8N688 67 aa20.32■□□□□ 0.84
COL6A1-204ENST00000486023 SPATA33Q96N06 139 aa20.32■□□□□ 0.84
COL6A1-204ENST00000486023 MLXIPQ9HAP2 919 aa20.32■□□□□ 0.84
COL6A1-204ENST00000486023 NOD1Q9Y239 953 aa20.32■□□□□ 0.84
COL6A1-204ENST00000486023 CDC27P30260 824 aa20.31■□□□□ 0.84
COL6A1-204ENST00000486023 ADD1P35611 737 aaKnown RBP20.31■□□□□ 0.84
COL6A1-204ENST00000486023 METAP2P50579 478 aaKnown RBP eCLIP20.31■□□□□ 0.84
COL6A1-204ENST00000486023 MRPS9P82933 396 aaKnown RBP20.31■□□□□ 0.84
COL6A1-204ENST00000486023 SP2Q02086 613 aa20.31■□□□□ 0.84
COL6A1-204ENST00000486023 PPIGQ13427 754 aaKnown RBP eCLIP20.31■□□□□ 0.84
COL6A1-204ENST00000486023 KCNV1Q6PIU1 500 aa20.31■□□□□ 0.84
COL6A1-204ENST00000486023 FAM161BQ96MY7 647 aa20.31■□□□□ 0.84
COL6A1-204ENST00000486023 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.31■□□□□ 0.84
COL6A1-204ENST00000486023 ALG1Q9BT22 464 aa20.31■□□□□ 0.84
COL6A1-204ENST00000486023 SEZ6LQ9BYH1 1024 aa20.31■□□□□ 0.84
COL6A1-204ENST00000486023 PPFIA3O75145 1194 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 SUPT20HL2P0C7V6 817 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 ZNF286BP0CG31 522 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 RPS6KB1P23443 525 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 PSMA5P28066 241 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 NAPAP54920 295 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 GNPTABQ3T906 1256 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 CELF3Q5SZQ8 465 aaKnown RBP20.3■□□□□ 0.84
COL6A1-204ENST00000486023 KCNB2Q92953 911 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 SCLYQ96I15 445 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 BCAS3Q9H6U6 928 aa20.3■□□□□ 0.84
COL6A1-204ENST00000486023 CNTNAP5Q8WYK1 1306 aa20.29■□□□□ 0.84
COL6A1-204ENST00000486023 SPDYE3A6NKU9 549 aa20.29■□□□□ 0.84
COL6A1-204ENST00000486023 UBA1P22314 1058 aaKnown RBP20.29■□□□□ 0.84
COL6A1-204ENST00000486023 SP4Q02446 784 aa20.29■□□□□ 0.84
COL6A1-204ENST00000486023 MYSM1Q5VVJ2 828 aa20.29■□□□□ 0.84
COL6A1-204ENST00000486023 ERICH6BQ5W0A0 696 aa20.29■□□□□ 0.84
COL6A1-204ENST00000486023 WWC2Q6AWC2 1192 aa20.29■□□□□ 0.84
COL6A1-204ENST00000486023 NFRKBQ6P4R8 1299 aa20.29■□□□□ 0.84
COL6A1-204ENST00000486023 NOC4LQ9BVI4 516 aaKnown RBP20.29■□□□□ 0.84
COL6A1-204ENST00000486023 LTBP2Q14767 1821 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms