RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-210ENST00000480956 KLHL3Q9UH77 587 aa9.43□□□□□ -0.9
LSM5-210ENST00000480956 GFRA2O00451 464 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 INMTO95050 263 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 TBC1D8O95759 1140 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 TP53P04637 393 aaPredicted RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 RARAP10276 462 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 ELF1P32519 619 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 SMCPP49901 116 aaPredicted RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 KPNA1P52294 538 aaPredicted RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 PMS1P54277 932 aaKnown RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 ICA1Q05084 483 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 NEXNQ0ZGT2 675 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 AP3B2Q13367 1082 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 TAF12Q16514 161 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 CCNG2Q16589 344 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 WIPI1Q5MNZ9 446 aaPredicted RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 KIAA1614Q5VZ46 1190 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 KIAA1191Q96A73 305 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 MRGBPQ9NV56 204 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 TMEM98Q9Y2Y6 226 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 A0A087WV62 115 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 SMTNL1A8MU46 457 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 NFKBIEO00221 500 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 NOP56O00567 594 aaKnown RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 HMMRO75330 724 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 PSAPP07602 524 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 GALNSP34059 522 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 PRIM2P49643 509 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 RELBQ01201 579 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 ANO4Q32M45 955 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 ABHD17CQ6PCB6 329 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 ADAMTSL4Q6UY14 1074 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 SYDE1Q6ZW31 735 aaPredicted RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 GRAMD1CQ8IYS0 662 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 KCT2Q8NC54 265 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 BVESQ8NE79 360 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 CHTF18Q8WVB6 975 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 HPS3Q969F9 1004 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 RSRC1Q96IZ7 334 aaKnown RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 FGD4Q96M96 766 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 BHMT2Q9H2M3 363 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 DISC1Q9NRI5 854 aa9.42□□□□□ -0.9
LSM5-210ENST00000480956 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.42□□□□□ -0.9
LSM5-210ENST00000480956 GTPBP10A4D1E9 387 aaKnown RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 H3BRJ5 948 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 PDE2AO00408 941 aaPredicted RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 DDX58O95786 925 aaKnown RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 GPC1P35052 558 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 CTNNA1P35221 906 aaKnown RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 MLLT1Q03111 559 aaPredicted RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 DDB1Q16531 1140 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 SLC45A4Q5BKX6 768 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 FKBP15Q5T1M5 1219 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 TDRD10Q5VZ19 366 aaKnown RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 MAP1SQ66K74 1059 aaPredicted RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 LILRA6Q6PI73 481 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 TMCO3Q6UWJ1 677 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 MPRIPQ6WCQ1 1025 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 PPFIBP1Q86W92 1011 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 CAMKK1Q8N5S9 505 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 ZNF713Q8N859 430 aaPredicted RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 SLC5A5Q92911 643 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 ZNF622Q969S3 477 aaKnown RBP eCLIP9.41□□□□□ -0.99e-7■□□□□ 9.3
LSM5-210ENST00000480956 MAP3K14Q99558 947 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 TMEM60Q9H2L4 133 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 ZNF395Q9H8N7 513 aaPredicted RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 CABP5Q9NP86 173 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 MARK1Q9P0L2 795 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 IFT80Q9P2H3 777 aaPredicted RBP9.41□□□□□ -0.9
LSM5-210ENST00000480956 TRAF6Q9Y4K3 522 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 PCDHA9Q9Y5H5 950 aa9.41□□□□□ -0.9
LSM5-210ENST00000480956 B3GALT4O96024 378 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 TNFSF4P23510 183 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 PEX2P28328 305 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 POLR2BP30876 1174 aaKnown RBP9.4□□□□□ -0.9
LSM5-210ENST00000480956 SOX18P35713 384 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 SCAND1P57086 179 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 KRT83P78385 493 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 PLCB4Q15147 1175 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 MIER2Q8N344 545 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 SLC30A5Q8TAD4 765 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 KCTD13Q8WZ19 329 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 CCDC34Q96HJ3 373 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 RMDN3Q96TC7 470 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 TTLL2Q9BWV7 592 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 LSM14BQ9BX40 385 aaKnown RBP9.4□□□□□ -0.9
LSM5-210ENST00000480956 GTPBP4Q9BZE4 634 aaKnown RBP9.4□□□□□ -0.9
LSM5-210ENST00000480956 LMAN2LQ9H0V9 348 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 PPARGC1AQ9UBK2 798 aaKnown RBP9.4□□□□□ -0.9
LSM5-210ENST00000480956 CCDC39Q9UFE4 941 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 SNX5Q9Y5X3 404 aa9.4□□□□□ -0.9
LSM5-210ENST00000480956 EIF3FO00303 357 aaPredicted RBP9.39□□□□□ -0.91
LSM5-210ENST00000480956 H2AFYO75367 372 aaKnown RBP9.39□□□□□ -0.91
LSM5-210ENST00000480956 WDR4P57081 412 aaKnown RBP9.39□□□□□ -0.91
LSM5-210ENST00000480956 NTRK3Q16288 839 aa9.39□□□□□ -0.91
LSM5-210ENST00000480956 Q6ZVU0 165 aa9.39□□□□□ -0.91
LSM5-210ENST00000480956 ADAT2Q7Z6V5 191 aaKnown RBP9.39□□□□□ -0.91
LSM5-210ENST00000480956 KRT78Q8N1N4 520 aa9.39□□□□□ -0.91
LSM5-210ENST00000480956 PPP1R35Q8TAP8 253 aa9.39□□□□□ -0.91
LSM5-210ENST00000480956 LTV1Q96GA3 475 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms