RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 HOOK2Q96ED9 719 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 SCYL1Q96KG9 808 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 MFSD14AQ96MC6 490 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 HSPA12BQ96MM6 686 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 SMAD5Q99717 465 aaKnown RBP6.88□□□□□ -1.31
UPF3B-203ENST00000478840 PCDHA2Q9Y5H9 948 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 TIMM13Q9Y5L4 95 aaPredicted RBP6.88□□□□□ -1.31
UPF3B-203ENST00000478840 SNX11Q9Y5W9 270 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 ARID4BQ4LE39 1312 aaPredicted RBP6.87□□□□□ -1.31
UPF3B-203ENST00000478840 SSU72P8A0A1W2PR75 194 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 PTPDC1A2A3K4 754 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 C7orf72A4D263 438 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 WASH4PA8MWX3 477 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 RFPL1O75677 317 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 ABLIM3O94929 683 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 GNALP38405 381 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 ST5P78524 1137 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 HLTFQ14527 1009 aaKnown RBP eCLIP6.87□□□□□ -1.31
UPF3B-203ENST00000478840 RGL3Q3MIN7 710 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 CDKAL1Q5VV42 579 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 IQSEC1Q6DN90 963 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 CD163Q86VB7 1156 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 C11orf74Q86VG3 221 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 TCEAL8Q8IYN2 117 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 EFHBQ8N7U6 833 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 CHTF18Q8WVB6 975 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 UBE2FQ969M7 185 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 GPR101Q96P66 508 aaPredicted RBP6.87□□□□□ -1.31
UPF3B-203ENST00000478840 DBNDD2Q9BQY9 259 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 RTFDC1Q9BY42 306 aaPredicted RBP6.87□□□□□ -1.31
UPF3B-203ENST00000478840 SLC13A1Q9BZW2 595 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 TCF7L1Q9HCS4 588 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 SPTLC3Q9NUV7 552 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 THG1LQ9NWX6 298 aaKnown RBP6.87□□□□□ -1.31
UPF3B-203ENST00000478840 ZSWIM5Q9P217 1185 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 DUSP13Q9UII6 198 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 PLAGL2Q9UPG8 496 aa6.87□□□□□ -1.31
UPF3B-203ENST00000478840 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.86□□□□□ -1.31
UPF3B-203ENST00000478840 C1QTNF9BB2RNN3 333 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 H7BY64 318 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 CEBPAP49715 358 aaPredicted RBP6.86□□□□□ -1.31
UPF3B-203ENST00000478840 KPNA1P52294 538 aaPredicted RBP6.86□□□□□ -1.31
UPF3B-203ENST00000478840 SESN3P58005 492 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 RPL11P62913 178 aaKnown RBP6.86□□□□□ -1.31
UPF3B-203ENST00000478840 KRT85P78386 507 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 TEKQ02763 1124 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 NFIAQ12857 509 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 FAM102BQ5T8I3 360 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 WDR75Q8IWA0 830 aaKnown RBP6.86□□□□□ -1.31
UPF3B-203ENST00000478840 MYO1HQ8N1T3 1032 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 FBXL6Q8N531 539 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 CDADC1Q9BWV3 514 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 AASDHPPTQ9NRN7 309 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 ERVK13-1Q9NX77 482 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 PPARGC1AQ9UBK2 798 aaKnown RBP6.86□□□□□ -1.31
UPF3B-203ENST00000478840 FBXL7Q9UJT9 491 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 CBLCQ9ULV8 474 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 PCDHA11Q9Y5I1 949 aa6.86□□□□□ -1.31
UPF3B-203ENST00000478840 PITPNM2Q9BZ72 1349 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 H3BS24 57 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 ZNF561-AS1K7EIQ3 104 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 ESR1P03372 595 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 DNM2P50570 870 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 CRY1Q16526 586 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 HABP4Q5JVS0 413 aaKnown RBP6.85□□□□□ -1.31
UPF3B-203ENST00000478840 CPNE8Q86YQ8 564 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 C2orf69Q8N8R5 385 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 FAM181AQ8N9Y4 354 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 TMEM52Q8NDY8 209 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 DPF3Q92784 378 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 TP53INP1Q96A56 240 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 FCRL2Q96LA5 508 aaPredicted RBP6.85□□□□□ -1.31
UPF3B-203ENST00000478840 SPOCK3Q9BQ16 436 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 RHOBTB2Q9BYZ6 727 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 OXSMQ9NWU1 459 aa6.85□□□□□ -1.31
UPF3B-203ENST00000478840 FZD9O00144 591 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 NPHS1O60500 1241 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 FKTNO75072 461 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 PROCP04070 461 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 ZBTB48P10074 688 aaPredicted RBP6.84□□□□□ -1.31
UPF3B-203ENST00000478840 LTKP29376 864 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 BCL6P41182 706 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 PHC1P78364 1004 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 KLF1Q13351 362 aaPredicted RBP6.84□□□□□ -1.31
UPF3B-203ENST00000478840 LAPTM5Q13571 262 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 IFI16Q16666 785 aaKnown RBP6.84□□□□□ -1.31
UPF3B-203ENST00000478840 HHIPL2Q6UWX4 724 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 ARHGAP27Q6ZUM4 889 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 NLRP10Q86W26 655 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 NAT16Q8N8M0 369 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 CLRN3Q8NCR9 226 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 TTC8Q8TAM2 541 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 AHCYL2Q96HN2 611 aaKnown RBP6.84□□□□□ -1.31
UPF3B-203ENST00000478840 BOCQ9BWV1 1114 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 CATSPERZQ9NTU4 200 aa6.84□□□□□ -1.31
UPF3B-203ENST00000478840 TMEM265A0A087WTH1 108 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 PLEKHD1A6NEE1 506 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 MSTNO14793 375 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 GSC2O15499 205 aa6.83□□□□□ -1.32
UPF3B-203ENST00000478840 TGM5O43548 720 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms