RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 NFE2L3Q9Y4A8 694 aa8.91□□□□□ -0.98
VMA21-203ENST00000477649 GJA3Q9Y6H8 435 aa8.91□□□□□ -0.98
VMA21-203ENST00000477649 BAZ2BQ9UIF8 2168 aaKnown RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 SYNRGQ9UMZ2 1314 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 PPP1R3GB7ZBB8 358 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 TDP2O95551 362 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 FGFR1OPO95684 399 aaKnown RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 TUBB4AP04350 444 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 PLCG1P19174 1290 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 LMOD1P29536 600 aaPredicted RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 ECE1P42892 770 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 TERF1P54274 439 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 OAZ1P54368 228 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 SETQ01105 290 aaPredicted RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 PAK1Q13153 545 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 TPD52L1Q16890 204 aaPredicted RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 TMEM119Q4V9L6 283 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 NOL9Q5SY16 702 aaKnown RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 MIGA2Q7L4E1 593 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 NIPA1Q7RTP0 329 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 SPC24Q8NBT2 197 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 GIMAP8Q8ND71 665 aaPredicted RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 KIAA1524Q8TCG1 905 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 LARP4BQ92615 738 aaKnown RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 C12orf42Q96LP6 360 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 SLF1Q9BQI6 1058 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 TRIM9Q9C026 710 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 XPO4Q9C0E2 1151 aaKnown RBP8.9□□□□□ -0.98
VMA21-203ENST00000477649 KCND1Q9NSA2 647 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 SPTLC3Q9NUV7 552 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 EXOC1Q9NV70 894 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 FANCLQ9NW38 375 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 IFNKQ9P0W0 207 aa8.9□□□□□ -0.98
VMA21-203ENST00000477649 GOLGB1Q14789 3259 aaKnown RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 MYPNQ86TC9 1320 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 ZC3H4Q9UPT8 1303 aaKnown RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 LRRC10BA6NIK2 292 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L15C9J2P7 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L13C9JLJ4 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L11C9JVI0 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L18D6R9N7 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L22D6RA61 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L17D6RBQ6 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L19D6RCP7 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L20D6RJB6 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 CCP110O43303 1012 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 SLC37A4O43826 429 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 EDIL3O43854 480 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 ZBED4O75132 1171 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 OFD1O75665 1012 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 SLURP2P0DP57 97 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 EEF1GP26641 437 aaKnown RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 ZNF76P36508 570 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 RASSF7Q02833 373 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L24Q0WX57 530 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 SHROOM1Q2M3G4 852 aaPredicted RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 TBC1D10BQ4KMP7 808 aaPredicted RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 CDKAL1Q5VV42 579 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 ISM2Q6H9L7 571 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 XRRA1Q6P2D8 792 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 USP17L6PQ6QN14 398 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 ARHGAP27Q6ZUM4 889 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 UNC13DQ70J99 1090 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 FAM114A1Q8IWE2 563 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 LRRC8AQ8IWT6 810 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 GRAMD1CQ8IYS0 662 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 SPICE1Q8N0Z3 855 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 ADSSL1Q8N142 457 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 RBM46Q8TBY0 533 aaKnown RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 SNX29Q8TEQ0 813 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 RAD54LQ92698 747 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 HAS1Q92839 578 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 KIFC2Q96AC6 838 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 NUP88Q99567 741 aaPredicted RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 MTRQ99707 1265 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 MMTAG2Q9BU76 263 aaKnown RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 HSD3B7Q9H2F3 369 aa8.89□□□□□ -0.99
VMA21-203ENST00000477649 CTDP1Q9Y5B0 961 aaPredicted RBP8.89□□□□□ -0.99
VMA21-203ENST00000477649 ZNF541Q9H0D2 1346 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.88□□□□□ -0.99
VMA21-203ENST00000477649 A0A1B0GTH6 734 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 TPM2P07951 284 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 BCRP11274 1271 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 PTGS1P23219 599 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 SFPQP23246 707 aaKnown RBP eCLIP8.88□□□□□ -0.99
VMA21-203ENST00000477649 HSD17B4P51659 736 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 BACE1P56817 501 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 ASIC1P78348 528 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 GRB10Q13322 594 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 TRIM14Q14142 442 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 NOLC1Q14978 699 aaKnown RBP eCLIP8.88□□□□□ -0.99
VMA21-203ENST00000477649 TKFCQ3LXA3 575 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 USH1GQ495M9 461 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 KMT5BQ4FZB7 885 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 SAMD7Q7Z3H4 446 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 LDHDQ86WU2 507 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 VSTM4Q8IW00 320 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 ZNF280CQ8ND82 737 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 ETNPPLQ8TBG4 499 aa8.88□□□□□ -0.99
VMA21-203ENST00000477649 NEK9Q8TD19 979 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms