RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZAP70P43403 619 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 USP5P45974 858 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 ZNF200P98182 395 aaPredicted RBP5.85□□□□□ -1.47
USP4-209ENST00000475873 PTPN11Q06124 597 aaPredicted RBP5.85□□□□□ -1.47
USP4-209ENST00000475873 MTMR3Q13615 1198 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 KCNC3Q14003 757 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 PLEKHG4Q58EX7 1191 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 SYCE2Q6PIF2 218 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 KIAA1211Q6ZU35 1233 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 ZBTB33Q86T24 672 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 RBM23Q86U06 439 aaKnown RBP5.85□□□□□ -1.47
USP4-209ENST00000475873 UBALD2Q8IYN6 164 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 FLCNQ8NFG4 579 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 FEZF2Q8TBJ5 459 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 ATP8B4Q8TF62 1192 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 CLP1Q92989 425 aaKnown RBP5.85□□□□□ -1.47
USP4-209ENST00000475873 NEUROD6Q96NK8 337 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 RIOK1Q9BRS2 568 aaKnown RBP5.85□□□□□ -1.47
USP4-209ENST00000475873 C11orf84Q9BUA3 381 aaPredicted RBP5.85□□□□□ -1.47
USP4-209ENST00000475873 SLC38A10Q9HBR0 1119 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 ARHGEF10LQ9HCE6 1279 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 DACH1Q9UI36 760 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 PLAGL2Q9UPG8 496 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 PLXNA4Q9HCM2 1894 aa5.85□□□□□ -1.47
USP4-209ENST00000475873 ITPR1Q14643 2758 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 BAZ2AQ9UIF9 1905 aaKnown RBP5.84□□□□□ -1.47
USP4-209ENST00000475873 RBM47A0AV96 593 aaKnown RBP5.84□□□□□ -1.47
USP4-209ENST00000475873 ASB14A6NK59 587 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 PER2O15055 1255 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 AMHP03971 560 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 RB1P06400 928 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 PMLP29590 882 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 CHMP4BP1P59074 171 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 MUM1L1Q5H9M0 696 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 PPM1JQ5JR12 505 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 SESTD1Q86VW0 696 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 MAML2Q8IZL2 1156 aaPredicted RBP5.84□□□□□ -1.47
USP4-209ENST00000475873 CHST13Q8NET6 341 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 OR6J1Q8NGC5 347 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 SPPL3Q8TCT6 385 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 APOL5Q9BWW9 433 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 WDR11Q9BZH6 1224 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 ERVK-5Q9HDB9 667 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 VTA1Q9NP79 307 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 PARD6AQ9NPB6 346 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 NOD1Q9Y239 953 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 IGSF10Q6WRI0 2623 aa5.84□□□□□ -1.47
USP4-209ENST00000475873 AKAP13Q12802 2813 aa5.84□□□□□ -1.48
USP4-209ENST00000475873 TTC3P53804 2025 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 CYP2D7A0A087X1C5 515 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 POTEMA6NI47 508 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 ARIH2O95376 493 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 PARNO95453 639 aaKnown RBP5.83□□□□□ -1.48
USP4-209ENST00000475873 NDUFB10O96000 172 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 SP9P0CG40 484 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 CPT1AP50416 773 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 POTEGQ6S5H5 508 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 FIBCD1Q8N539 461 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 CCDC155Q8N6L0 562 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 RTKNQ9BST9 563 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 IFIH1Q9BYX4 1025 aaKnown RBP5.83□□□□□ -1.48
USP4-209ENST00000475873 MFSD1Q9H3U5 465 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 POMKQ9H5K3 350 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 DLGAP2Q9P1A6 1054 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 HDAC6Q9UBN7 1215 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 GTF2IRD1Q9UHL9 959 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 CDV3Q9UKY7 258 aaKnown RBP5.83□□□□□ -1.48
USP4-209ENST00000475873 ZMIZ1Q9ULJ6 1067 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 CELSR3Q9NYQ7 3312 aa5.83□□□□□ -1.48
USP4-209ENST00000475873 FREM2Q5SZK8 3169 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 ADGRA3Q8IWK6 1321 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 C1QTNF9BB2RNN3 333 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 USP17L12C9JPN9 530 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 USP17L21D6R901 530 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 RAD21O60216 631 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 POLR3DP05423 398 aaPredicted RBP5.82□□□□□ -1.48
USP4-209ENST00000475873 PROS1P07225 676 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 UQCRFS1P1P0C7P4 283 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 C1QTNF9P0C862 333 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 PRKCSHP14314 528 aaPredicted RBP5.82□□□□□ -1.48
USP4-209ENST00000475873 SHC2P98077 582 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 DMWDQ09019 674 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 LURAP1LQ8IV03 231 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 MRPL50Q8N5N7 158 aaKnown RBP5.82□□□□□ -1.48
USP4-209ENST00000475873 PRPF38AQ8NAV1 312 aaKnown RBP5.82□□□□□ -1.48
USP4-209ENST00000475873 SDR42E1Q8WUS8 393 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 KIFC2Q96AC6 838 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 ZNF689Q96CS4 500 aaPredicted RBP5.82□□□□□ -1.48
USP4-209ENST00000475873 IL17RAQ96F46 866 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 DBNDD2Q9BQY9 259 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 ANTXR1Q9H6X2 564 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 SH2D4AQ9H788 454 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 ACAD9Q9H845 621 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 DCP1AQ9NPI6 582 aaPredicted RBP5.82□□□□□ -1.48
USP4-209ENST00000475873 GPHNQ9NQX3 736 aaPredicted RBP5.82□□□□□ -1.48
USP4-209ENST00000475873 TSHZ2Q9NRE2 1034 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 RNF146Q9NTX7 359 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 MCM9Q9NXL9 1143 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 CYP39A1Q9NYL5 469 aa5.82□□□□□ -1.48
USP4-209ENST00000475873 FBXO40Q9UH90 709 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms