RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 NECTIN4Q96NY8 510 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 RAVER2Q9HCJ3 691 aaKnown RBP9.67□□□□□ -0.86
USP54-211ENST00000474929 PDGFCQ9NRA1 345 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 NCDNQ9UBB6 729 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 FEM1BQ9UK73 627 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 ANGPTL2Q9UKU9 493 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 BARX2Q9UMQ3 279 aaPredicted RBP9.67□□□□□ -0.86
USP54-211ENST00000474929 SYNPO2Q9UMS6 1093 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 RBM47A0AV96 593 aaKnown RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 KINO60870 393 aaKnown RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 IDH1O75874 414 aaKnown RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 BRD1O95696 1058 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 AKR1B1P15121 316 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 GTF2F1P35269 517 aaKnown RBP eCLIP9.66□□□□□ -0.861e-8■■■■■ 57
USP54-211ENST00000474929 CWF19L1Q69YN2 538 aaKnown RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 SIAH1Q8IUQ4 282 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 RPAP2Q8IXW5 612 aaPredicted RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 DBF4BQ8NFT6 615 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 SCFD2Q8WU76 684 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 DHX38Q92620 1227 aaKnown RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 HOMER2Q9NSB8 354 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 RNF146Q9NTX7 359 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 RNF216Q9NWF9 866 aaPredicted RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 GTF2IRD1Q9UHL9 959 aa9.66□□□□□ -0.86
USP54-211ENST00000474929 FLNBO75369 2602 aaKnown RBP9.66□□□□□ -0.86
USP54-211ENST00000474929 B4DLN1 442 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 SPTLC1O15269 473 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 CAND2O75155 1236 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 HOXB8P17481 243 aaPredicted RBP9.65□□□□□ -0.86
USP54-211ENST00000474929 NRIP1P48552 1158 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 MRPL12P52815 198 aaKnown RBP9.65□□□□□ -0.86
USP54-211ENST00000474929 PLEKHG4Q58EX7 1191 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 GDF6Q6KF10 455 aaPredicted RBP9.65□□□□□ -0.86
USP54-211ENST00000474929 CLEC10AQ8IUN9 316 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 LRRC47Q8N1G4 583 aaKnown RBP9.65□□□□□ -0.86
USP54-211ENST00000474929 C7orf31Q8N865 590 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 DDX1Q92499 740 aaKnown RBP9.65□□□□□ -0.86
USP54-211ENST00000474929 KIFC2Q96AC6 838 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 DDRGK1Q96HY6 314 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 SMC4Q9NTJ3 1288 aa9.65□□□□□ -0.86
USP54-211ENST00000474929 ZFYVE26Q68DK2 2539 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 MAST4O15021 2626 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 UPP2O95045 317 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 GLP2RO95838 553 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 TCTN1Q2MV58 587 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 ZNF618Q5T7W0 954 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 PDE12Q6L8Q7 609 aaKnown RBP9.64□□□□□ -0.87
USP54-211ENST00000474929 PLCD3Q8N3E9 789 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 CTAGE1Q96RT6 745 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 GPR108Q9NPR9 543 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 SNRKQ9NRH2 765 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 RALYQ9UKM9 306 aaKnown RBP9.64□□□□□ -0.87
USP54-211ENST00000474929 R4GN57 208 aa9.64□□□□□ -0.87
USP54-211ENST00000474929 FANCMQ8IYD8 2048 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 MAGEB6P1A0A0J9YX57 407 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 RSPH10B2B2RC85 870 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 SRGAP3O43295 1099 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 RSPH10BP0C881 870 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 CASTP20810 708 aaKnown RBP9.63□□□□□ -0.87
USP54-211ENST00000474929 RFX1P22670 979 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 CHMP4BP1P59074 171 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 UBE3AQ05086 875 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 PDE4BQ07343 736 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 RIOK1Q9BRS2 568 aaKnown RBP9.63□□□□□ -0.87
USP54-211ENST00000474929 TLE6Q9H808 572 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 TSHZ2Q9NRE2 1034 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 CYP39A1Q9NYL5 469 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 PLAGL2Q9UPG8 496 aa9.63□□□□□ -0.87
USP54-211ENST00000474929 FRYLO94915 3013 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 MYO5AQ9Y4I1 1855 aaKnown RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 F5H6K3 240 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 NDUFB10O96000 172 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 PTGS1P23219 599 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 ZAP70P43403 619 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 ALDH5A1P51649 535 aaPredicted RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 STAT2P52630 851 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 SHC2P98077 582 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 KLRC3Q07444 240 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 MTX1Q13505 466 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 BTG3Q14201 252 aaPredicted RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 MBTPS1Q14703 1052 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 TRIM71Q2Q1W2 868 aaKnown RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 TPRNQ4KMQ1 711 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 PPM1JQ5JR12 505 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 VARS2Q5ST30 1063 aaKnown RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 CES5AQ6NT32 575 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 TRAF7Q6Q0C0 670 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 C16orf86Q6ZW13 317 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 FAM160B2Q86V87 743 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 ZDHHC14Q8IZN3 488 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 TDRD5Q8NAT2 981 aaKnown RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 ATP8B4Q8TF62 1192 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 TRERF1Q96PN7 1200 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 NUP88Q99567 741 aaPredicted RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 DCP1AQ9NPI6 582 aaPredicted RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 PIH1D3Q9NQM4 214 aaKnown RBP9.62□□□□□ -0.87
USP54-211ENST00000474929 NYAP2Q9P242 653 aa9.62□□□□□ -0.87
USP54-211ENST00000474929 GREB1LQ9C091 1923 aaPredicted RBP9.61□□□□□ -0.87
USP54-211ENST00000474929 E9PSI1 815 aa9.61□□□□□ -0.87
USP54-211ENST00000474929 PROS1P07225 676 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms