RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 XRN1Q8IZH2 1706 aaKnown RBP4.65□□□□□ -1.67
VPS50-210ENST00000471188 NHSL1Q5SYE7 1610 aa4.65□□□□□ -1.67
VPS50-210ENST00000471188 MAP2P11137 1827 aaKnown RBP4.65□□□□□ -1.67
VPS50-210ENST00000471188 UBN2Q6ZU65 1347 aa4.65□□□□□ -1.67
VPS50-210ENST00000471188 ANO9A1A5B4 782 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 H0Y3Z8 333 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 CETN3O15182 167 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 GPR37O15354 613 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ZNF189O75820 626 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 MOCS3O95396 460 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 PARP1P09874 1014 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 POLD1P28340 1107 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 IFNAR2P48551 515 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 TUBP50607 506 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 MRPS35P82673 323 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 GRIN1Q05586 938 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 KLC1Q07866 573 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 DYNC1I2Q13409 638 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 TRIM14Q14142 442 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 CDC37Q16543 378 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 KCTD19Q17RG1 926 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 MTHFSDQ2M296 383 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 CCDC178Q5BJE1 867 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RASIP1Q5U651 963 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RRAGBQ5VZM2 374 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 USPL1Q5W0Q7 1092 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 KRT40Q6A162 431 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 CEP128Q6ZU80 1094 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 KRT26Q7Z3Y9 468 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RALYLQ86SE5 291 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 SDCCAG8Q86SQ7 713 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 TEX9Q8N6V9 391 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 SLC17A8Q8NDX2 589 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 PHKBQ93100 1093 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 EEF2KMTQ96G04 330 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 LTV1Q96GA3 475 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 CCDC42Q96M95 316 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 NDST4Q9H3R1 872 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ECT2Q9H8V3 914 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 MLXIPQ9HAP2 919 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 IL21Q9HBE4 155 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 TMBIM4Q9HC24 238 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 HYOU1Q9Y4L1 999 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 CD163L1Q9NR16 1453 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 SALL1Q9NSC2 1324 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ABCC3O15438 1527 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RBM47A0AV96 593 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 SASH1O94885 1247 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 UBOX5O94941 541 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 MYL6BP14649 208 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 DESP17661 470 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 TCP1P17987 556 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 RAD23BP54727 409 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 SESN3P58005 492 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RIPK1Q13546 671 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 TRADDQ15628 312 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 IFI16Q16666 785 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 MUM1Q2TAK8 710 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 PPP1R18Q6NYC8 613 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 DNAJC14Q6Y2X3 702 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 TRPM8Q7Z2W7 1104 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RNF168Q8IYW5 571 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 CCDC155Q8N6L0 562 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 TRIML1Q8N9V2 468 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 CNKSR1Q969H4 720 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 SYT15Q9BQS2 421 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 MAF1Q9H063 256 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 PREBQ9HCU5 417 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 PCMTD2Q9NV79 361 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 WDR35Q9P2L0 1181 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 CAPN6Q9Y6Q1 641 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 KIF1BO60333 1816 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 NRXN3Q9Y4C0 1643 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 MARF1Q9Y4F3 1742 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 COL22A1Q8NFW1 1626 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 KCNJ18B7U540 433 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 PRC1O43663 620 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 BUB1O43683 1085 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 AKR1B10O60218 316 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 GBP1P32455 592 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 PBX1P40424 430 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 TMEM62Q0P6H9 643 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 BYSLQ13895 437 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 KCNJ12Q14500 433 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ZNF268Q14587 947 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 SEPT2Q15019 361 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 SAFBQ15424 915 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS50-210ENST00000471188 TSNAXIP1Q2TAA8 658 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 CFAP221Q4G0U5 840 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ANO7Q6IWH7 933 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 KANK3Q6NY19 840 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 GIGYF2Q6Y7W6 1299 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 USP49Q70CQ1 688 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 APTXQ7Z2E3 356 aaKnown RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 CACNA2D4Q7Z3S7 1137 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 MICU3Q86XE3 530 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 ELOA2Q8IYF1 753 aaPredicted RBP4.64□□□□□ -1.67
VPS50-210ENST00000471188 CCDC82Q8N4S0 544 aa4.64□□□□□ -1.67
VPS50-210ENST00000471188 RNF10Q8N5U6 811 aaKnown RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms