RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ZNF263O14978 683 aa21.27■■□□□ 1
VIM-203ENST00000469543 HLA-DOAP06340 250 aa21.27■■□□□ 1
VIM-203ENST00000469543 TSR1Q2NL82 804 aaKnown RBP21.27■■□□□ 1
VIM-203ENST00000469543 KIAA1024Q9UPX6 916 aa21.27■■□□□ 1
VIM-203ENST00000469543 ATP1A1P05023 1023 aaKnown RBP21.27■■□□□ 1
VIM-203ENST00000469543 CHRNA5P30532 468 aa21.27■■□□□ 1
VIM-203ENST00000469543 UNC13DQ70J99 1090 aa21.27■■□□□ 1
VIM-203ENST00000469543 NLGN1Q8N2Q7 840 aa21.27■■□□□ 1
VIM-203ENST00000469543 MMRN2Q9H8L6 949 aa21.27■■□□□ 1
VIM-203ENST00000469543 MYH7BA7E2Y1 1941 aa21.27■□□□□ 0.99
VIM-203ENST00000469543 MACROD2A1Z1Q3 448 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 HHIPL2Q6UWX4 724 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 ZNF771Q7L3S4 317 aaPredicted RBP21.26■□□□□ 0.99
VIM-203ENST00000469543 SPICE1Q8N0Z3 855 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 MAGEF1Q9HAY2 307 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 SWAP70Q9UH65 585 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 POTEB3A0JP26 581 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 POTECB2RU33 542 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 MRPL12P52815 198 aaKnown RBP21.26■□□□□ 0.99
VIM-203ENST00000469543 PDIA5Q14554 519 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 CERKLQ49MI3 558 aaPredicted RBP21.26■□□□□ 0.99
VIM-203ENST00000469543 POTEBQ6S5H4 581 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 NELFCDQ8IXH7 590 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 CAPZA3Q96KX2 299 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 NDST4Q9H3R1 872 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 BCAS3Q9H6U6 928 aa21.26■□□□□ 0.99
VIM-203ENST00000469543 GYS2P54840 703 aa21.25■□□□□ 0.99
VIM-203ENST00000469543 PPP4R3AQ6IN85 833 aa21.25■□□□□ 0.99
VIM-203ENST00000469543 GTPBP4Q9BZE4 634 aaKnown RBP21.25■□□□□ 0.99
VIM-203ENST00000469543 APBA3O96018 575 aa21.25■□□□□ 0.99
VIM-203ENST00000469543 ALDH1B1P30837 517 aa21.25■□□□□ 0.99
VIM-203ENST00000469543 DNAJC19Q96DA6 116 aa21.25■□□□□ 0.99
VIM-203ENST00000469543 TDRD3Q9H7E2 651 aaKnown RBP21.25■□□□□ 0.99
VIM-203ENST00000469543 MYO6Q9UM54 1294 aa21.25■□□□□ 0.99
VIM-203ENST00000469543 ZNF185O15231 689 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 AMPD2Q01433 879 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 MEA1Q16626 185 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 SLFN13Q68D06 897 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 KIAA1328Q86T90 577 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 C2CD5Q86YS7 1000 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 FUT8Q9BYC5 575 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 ARFGAP3Q9NP61 516 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 SUGT1Q9Y2Z0 365 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 FOCADQ5VW36 1801 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 SMCHD1A6NHR9 2005 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 MEIS1O00470 390 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 RRP1BQ14684 758 aaKnown RBP21.24■□□□□ 0.99
VIM-203ENST00000469543 CDC37Q16543 378 aaPredicted RBP21.24■□□□□ 0.99
VIM-203ENST00000469543 VWA3BQ502W6 1294 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 GPATCH4Q5T3I0 446 aaKnown RBP21.24■□□□□ 0.99
VIM-203ENST00000469543 CYP2W1Q8TAV3 490 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 ZHX3Q9H4I2 956 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 STK17AQ9UEE5 414 aa21.24■□□□□ 0.99
VIM-203ENST00000469543 PSMC6P62333 389 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 ZBED6P86452 979 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 hCG_1984214I3L0E3 225 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 HOXA13P31271 388 aaPredicted RBP21.23■□□□□ 0.99
VIM-203ENST00000469543 LONRF2Q1L5Z9 754 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 TMEM119Q4V9L6 283 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 TMC4Q7Z404 712 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 ZNF713Q8N859 430 aaPredicted RBP21.23■□□□□ 0.99
VIM-203ENST00000469543 NOC3LQ8WTT2 800 aaKnown RBP21.23■□□□□ 0.99
VIM-203ENST00000469543 MASTLQ96GX5 879 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 ZFP91Q96JP5 570 aaPredicted RBP21.23■□□□□ 0.99
VIM-203ENST00000469543 ZDHHC15Q96MV8 337 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 CRACR2AQ9BSW2 395 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 RAB34Q9BZG1 259 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 TANGO6Q9C0B7 1094 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 ARHGAP20Q9P2F6 1191 aa21.23■□□□□ 0.99
VIM-203ENST00000469543 ATF5Q9Y2D1 282 aaPredicted RBP21.23■□□□□ 0.99
VIM-203ENST00000469543 MEIS2O14770 477 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 COASYQ13057 564 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 IKQ13123 557 aaPredicted RBP21.22■□□□□ 0.99
VIM-203ENST00000469543 AOC3Q16853 763 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 LRRC55Q6ZSA7 311 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 MTMR8Q96EF0 704 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 MYH4Q9Y623 1939 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 PVALEFA0A1B0GWK0 134 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 POTEFA5A3E0 1075 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 F5H6K3 240 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 ECE2O60344 883 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 POTEIP0CG38 1075 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 KLRC3Q07444 240 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 PRR16Q569H4 304 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 FKBP15Q5T1M5 1219 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 UTP14CQ5TAP6 766 aaKnown RBP21.22■□□□□ 0.99
VIM-203ENST00000469543 POTEGQ6S5H5 508 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 POTEEQ6S8J3 1075 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 ANKRD13CQ8N6S4 541 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 CEP112Q8N8E3 955 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 JAKMIP2Q96AA8 810 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 DRC1Q96MC2 740 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 MMS19Q96T76 1030 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 TMX4Q9H1E5 349 aaPredicted RBP21.22■□□□□ 0.99
VIM-203ENST00000469543 PANK4Q9NVE7 773 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 SIK3Q9Y2K2 1263 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 LRRC37AA6NMS7 1700 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 MED24O75448 989 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 PDE6BP35913 854 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 VSNL1P62760 191 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms