RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PLEKHO2Q8TD55 490 aa6.64□□□□□ -1.35
CCDC88A-210ENST00000468534 DPF3Q92784 378 aa6.64□□□□□ -1.35
CCDC88A-210ENST00000468534 SEC16BQ96JE7 1060 aa6.64□□□□□ -1.35
CCDC88A-210ENST00000468534 CCDC136Q96JN2 1154 aa6.64□□□□□ -1.35
CCDC88A-210ENST00000468534 AP5M1Q9H0R1 490 aa6.64□□□□□ -1.35
CCDC88A-210ENST00000468534 C22orf46C9J442 243 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 NAT2P11245 290 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 NCLP19338 710 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 FPR2P25090 351 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 CD300LDQ6UXZ3 194 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 ETV3LQ6ZN32 361 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 ZNF761Q86XN6 746 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 TRIM59Q8IWR1 403 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 FAM26EQ8N5C1 309 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 MMP19Q99542 508 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 GORASP1Q9BQQ3 440 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 LNPKQ9C0E8 428 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 CCSER2Q9H7U1 834 aa6.63□□□□□ -1.35
CCDC88A-210ENST00000468534 PLEKHD1A6NEE1 506 aa6.62□□□□□ -1.35
CCDC88A-210ENST00000468534 SGSM2O43147 1006 aa6.62□□□□□ -1.35
CCDC88A-210ENST00000468534 SETQ01105 290 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-210ENST00000468534 HHIPL2Q6UWX4 724 aa6.62□□□□□ -1.35
CCDC88A-210ENST00000468534 BTN2A2Q8WVV5 523 aa6.62□□□□□ -1.35
CCDC88A-210ENST00000468534 MRVI1Q9Y6F6 885 aa6.62□□□□□ -1.35
CCDC88A-210ENST00000468534 LOC102724159A0A0B4J2E5 919 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 A0A0U1RQG5 324 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 TBX1O43435 398 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 NCAPHQ15003 741 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 PWP2Q15269 919 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 ZNF827Q17R98 1081 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 LARP1BQ659C4 914 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 ADAMTS17Q8TE56 1095 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 FRS2Q8WU20 508 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 BORCS6Q96GS4 357 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 C11orf84Q9BUA3 381 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 TGIF2Q9GZN2 237 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 NKX2-4Q9H2Z4 354 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 KIAA1522Q9P206 1035 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 STRIP2Q9ULQ0 834 aa6.61□□□□□ -1.35
CCDC88A-210ENST00000468534 B2RBV5 119 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 INSRRP14616 1297 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 ECI1P42126 302 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 ZNF143P52747 638 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 RPL11P62913 178 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 SV2CQ496J9 727 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 C6orf15Q6UXA7 325 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 MILR1Q7Z6M3 343 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 EXOC8Q8IYI6 725 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 LINC00482Q8N8I6 264 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 MRGPRX3Q96LB0 322 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 NAP1L5Q96NT1 182 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 GPR20Q99678 358 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 CYP26B1Q9NR63 512 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 LRP2BPQ9P2M1 347 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 TMEFF2Q9UIK5 374 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 PALD1Q9ULE6 856 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 RIPOR2Q9Y4F9 1068 aa6.6□□□□□ -1.35
CCDC88A-210ENST00000468534 SMAD7O15105 426 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 SNRPB2P08579 225 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 THBS2P35442 1172 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 STAT5AP42229 794 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 CYP4F3Q08477 520 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 PUM1Q14671 1186 aaKnown RBP eCLIP6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 ZXDCQ2QGD7 858 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 RGL3Q3MIN7 710 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 NOL8Q76FK4 1167 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 CEP68Q76N32 757 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 ZC3H18Q86VM9 953 aaKnown RBP6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 CCDC103Q8IW40 242 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 NPLOC4Q8TAT6 608 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 SEC14L1Q92503 715 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 YIPF4Q9BSR8 244 aa6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 TIMM13Q9Y5L4 95 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-210ENST00000468534 MAFGO15525 162 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 ITGAVP06756 1048 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 BCL6P41182 706 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 KCNJ6P48051 423 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 PRSS53Q2L4Q9 553 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 MCTP2Q6DN12 878 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 MIB1Q86YT6 1006 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 KYQ8NBH2 561 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 DIO2Q92813 273 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 TRMT2BQ96GJ1 504 aaKnown RBP6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 CHAMP1Q96JM3 812 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 DRC1Q96MC2 740 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 ACTR10Q9NZ32 417 aa6.58□□□□□ -1.36
CCDC88A-210ENST00000468534 MEFVO15553 781 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 MYO1BO43795 1136 aa6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 SSBP05455 408 aaKnown RBP eCLIP6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 ATF4P18848 351 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 RPL13P26373 211 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 ZEB1P37275 1124 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 RBM10P98175 930 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 SF1Q15637 639 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 IQCEQ6IPM2 695 aa6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 NLRP10Q86W26 655 aa6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 ZNF227Q86WZ6 799 aa6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 FAM178BQ8IXR5 827 aa6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 TMEM169Q96HH4 297 aa6.57□□□□□ -1.36
CCDC88A-210ENST00000468534 CAPN10Q9HC96 672 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms