RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 GUF1Q8N442 669 aaKnown RBP9.96□□□□□ -0.81
SYNE1-217ENST00000466159 RETREG2Q8NC44 543 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 CCDC17Q96LX7 622 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 ZDHHC15Q96MV8 337 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 ERGIC2Q96RQ1 377 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 TMX4Q9H1E5 349 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-217ENST00000466159 EHD4Q9H223 541 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 ANKZF1Q9H8Y5 726 aa9.96□□□□□ -0.81
SYNE1-217ENST00000466159 ZHX1Q9UKY1 873 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-217ENST00000466159 ATF5Q9Y2D1 282 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-217ENST00000466159 ARFGEF1Q9Y6D6 1849 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 EPHB6O15197 1021 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 SLC1A4P43007 532 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 AMPD2Q01433 879 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 EHHADHQ08426 723 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 TUBB2AQ13885 445 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 CERKLQ49MI3 558 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-217ENST00000466159 VWA3BQ502W6 1294 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 FKBP15Q5T1M5 1219 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 NCAPH2Q6IBW4 605 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 SH3BP5LQ7L8J4 393 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 PODNQ7Z5L7 613 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 TUBB2BQ9BVA1 445 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 LACRTQ9GZZ8 138 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 HAUS4Q9H6D7 363 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 ARFGAP3Q9NP61 516 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 ZNHIT6Q9NWK9 470 aaKnown RBP9.96□□□□□ -0.82
SYNE1-217ENST00000466159 ZNF219Q9P2Y4 722 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-217ENST00000466159 HDAC6Q9UBN7 1215 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 FAM198AQ9UFP1 575 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 MYO6Q9UM54 1294 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 PCDHA1Q9Y5I3 950 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 SIPA1L1O43166 1804 aa9.96□□□□□ -0.82
SYNE1-217ENST00000466159 SSBP05455 408 aaKnown RBP eCLIP9.95□□□□□ -0.82
SYNE1-217ENST00000466159 PLEKP08567 350 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-217ENST00000466159 SNAP25P60880 206 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 CYP27A1Q02318 531 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 SEPT2Q15019 361 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 SLFN13Q68D06 897 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 KIAA1328Q86T90 577 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 SIAH1Q8IUQ4 282 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 AKT1S1Q96B36 256 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 DNAJC19Q96DA6 116 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 PNKPQ96T60 521 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 NDST4Q9H3R1 872 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 FAM207AQ9NSI2 230 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-217ENST00000466159 DUSP10Q9Y6W6 482 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 C10orf71Q711Q0 1435 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 SCN9AQ15858 1988 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 E9PMD0 336 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 CYLC1P35663 651 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-217ENST00000466159 KRT83P78385 493 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 COASYQ13057 564 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 CDC37Q16543 378 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-217ENST00000466159 GPIHBP1Q8IV16 184 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 TBC1D7Q9P0N9 293 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 PI4KBQ9UBF8 816 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 SIK3Q9Y2K2 1263 aa9.95□□□□□ -0.82
SYNE1-217ENST00000466159 A0A1W2PQJ5 194 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 CTAGE15A4D2H0 777 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 PSMD14O00487 310 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 ATP1A1P05023 1023 aaKnown RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 RHOXF2BP0C7M4 288 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 CTAGE8P0CG41 777 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 GCFC2P16383 781 aaKnown RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 WHAMMP3Q1A5X7 153 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 FIGNQ5HY92 759 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 LRRC55Q6ZSA7 311 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 CTAGE6Q86UF2 777 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 CTAGE4Q8IX94 777 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 MKL1Q969V6 931 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 JAKMIP2Q96AA8 810 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 P2RX7Q99572 595 aaKnown RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 RHOXF2Q9BQY4 288 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 FUT8Q9BYC5 575 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 FGFBP2Q9BYJ0 223 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 DHX36Q9H2U1 1008 aaKnown RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 KANSL2Q9H9L4 492 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 KIAA1024Q9UPX6 916 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 NPHP3-ACAD11A0A0J9YXS1 232 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 POTEB3A0JP26 581 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 CCDC151A5D8V7 595 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 POTECB2RU33 542 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 EIF3CLB5ME19 914 aaKnown RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 ZNF263O14978 683 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 ATP8B1O43520 1251 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 ECE2O60344 883 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 SRGAP2O75044 1071 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 GDF11O95390 407 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 STAT3P40763 770 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 CACNB1Q02641 598 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 LRRC63Q05C16 580 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 PSMD2Q13200 908 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 MAN2A1Q16706 1144 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 LONRF2Q1L5Z9 754 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 DACT2Q5SW24 774 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 POTEBQ6S5H4 581 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 ZNF771Q7L3S4 317 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-217ENST00000466159 TRAPPC11Q7Z392 1133 aa9.94□□□□□ -0.82
SYNE1-217ENST00000466159 KRT26Q7Z3Y9 468 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms