RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RCAN1P53805 252 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 PDE4DQ08499 809 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 RASIP1Q5U651 963 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.48■□□□□ 0.87
COL7A1-205ENST00000465238 RGS22Q8NE09 1264 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 MYLIPQ8WY64 445 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 HIPK3Q9H422 1215 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 RIOX1Q9H6W3 641 aa20.48■□□□□ 0.87
COL7A1-205ENST00000465238 RBM28Q9NW13 759 aaKnown RBP20.48■□□□□ 0.87
COL7A1-205ENST00000465238 GOLGA8AA7E2F4 631 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 GOLGA8BA8MQT2 603 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 EDNRBP24530 442 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 RTN1Q16799 776 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 QRICH1Q2TAL8 776 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 USH1GQ495M9 461 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 ZNF365Q70YC5 407 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 MAFAQ8NHW3 353 aaPredicted RBP20.47■□□□□ 0.87
COL7A1-205ENST00000465238 IL23AQ9NPF7 189 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 PRUNE2Q8WUY3 3088 aa20.47■□□□□ 0.87
COL7A1-205ENST00000465238 NKRFO15226 690 aaKnown RBP eCLIP20.46■□□□□ 0.87
COL7A1-205ENST00000465238 B4GALT4O60513 344 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 ACRP10323 421 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 METAP2P50579 478 aaKnown RBP eCLIP20.46■□□□□ 0.87
COL7A1-205ENST00000465238 PSMC6P62333 389 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 TOB2Q14106 344 aaPredicted RBP20.46■□□□□ 0.87
COL7A1-205ENST00000465238 PPP2R5BQ15173 497 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 BRDTQ58F21 947 aaPredicted RBP20.46■□□□□ 0.87
COL7A1-205ENST00000465238 FBXO11Q86XK2 927 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 HOMER1Q86YM7 354 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 SCFD2Q8WU76 684 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 SPZ1Q9BXG8 430 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 TRPV6Q9H1D0 765 aa20.46■□□□□ 0.87
COL7A1-205ENST00000465238 CCDC196A0A1B0GTZ2 297 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 ZBTB5O15062 677 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 PLEKHA8P1O95397 391 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 FOSL2P15408 326 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 RBM25P49756 843 aaKnown RBP20.45■□□□□ 0.86
COL7A1-205ENST00000465238 NEK4P51957 841 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 PURAQ00577 322 aaKnown RBP20.45■□□□□ 0.86
COL7A1-205ENST00000465238 TRAF1Q13077 416 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 ANKRD1Q15327 319 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 TMTC3Q6ZXV5 915 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 SRBD1Q8N5C6 995 aaKnown RBP20.45■□□□□ 0.86
COL7A1-205ENST00000465238 OR6J1Q8NGC5 347 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 TIFAQ96CG3 184 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 MTMR8Q96EF0 704 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 RRP36Q96EU6 259 aaKnown RBP20.45■□□□□ 0.86
COL7A1-205ENST00000465238 PIGSQ96S52 555 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 NOC4LQ9BVI4 516 aaKnown RBP20.45■□□□□ 0.86
COL7A1-205ENST00000465238 AMNQ9BXJ7 453 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 BACH2Q9BYV9 841 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 ALDH8A1Q9H2A2 487 aaPredicted RBP20.45■□□□□ 0.86
COL7A1-205ENST00000465238 MTIF3Q9H2K0 278 aaKnown RBP20.45■□□□□ 0.86
COL7A1-205ENST00000465238 ABCB11O95342 1321 aa20.45■□□□□ 0.86
COL7A1-205ENST00000465238 PNMA6FA0A0J9YX94 578 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 CYTH3O43739 400 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 EVCP57679 992 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 SLC35G1Q2M3R5 365 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 CMTR1Q8N1G2 835 aaKnown RBP20.44■□□□□ 0.86
COL7A1-205ENST00000465238 CCDC82Q8N4S0 544 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 PIBF1Q8WXW3 757 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 HERVK_113Q902F9 699 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 MTG1Q9BT17 334 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-205ENST00000465238 UMODL1Q5DID0 1318 aa20.44■□□□□ 0.86
COL7A1-205ENST00000465238 SCN10AQ9Y5Y9 1956 aa20.43■□□□□ 0.86
COL7A1-205ENST00000465238 KPNA6O60684 536 aa20.43■□□□□ 0.86
COL7A1-205ENST00000465238 FGBP02675 491 aa20.43■□□□□ 0.86
COL7A1-205ENST00000465238 MYL3P08590 195 aa20.43■□□□□ 0.86
COL7A1-205ENST00000465238 SUPT20HL2P0C7V6 817 aa20.43■□□□□ 0.86
COL7A1-205ENST00000465238 PDIA3P30101 505 aaKnown RBP20.43■□□□□ 0.86
COL7A1-205ENST00000465238 ZNF274Q96GC6 653 aaPredicted RBP20.43■□□□□ 0.86
COL7A1-205ENST00000465238 LARP6Q9BRS8 491 aaKnown RBP20.43■□□□□ 0.86
COL7A1-205ENST00000465238 ZNF576Q9H609 170 aa20.43■□□□□ 0.86
COL7A1-205ENST00000465238 SEC63Q9UGP8 760 aaKnown RBP20.43■□□□□ 0.86
COL7A1-205ENST00000465238 MYO9BQ13459 2157 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 CHD9Q3L8U1 2897 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 A6NJR5 290 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 TXNP10599 105 aaKnown RBP20.42■□□□□ 0.86
COL7A1-205ENST00000465238 CCL23P55773 120 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 TTLL4Q14679 1199 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 GRIN2CQ14957 1233 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 MCF2L2Q86YR7 1114 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 RPUSD2Q8IZ73 545 aaKnown RBP20.42■□□□□ 0.86
COL7A1-205ENST00000465238 PBX4Q9BYU1 374 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 WNT8AQ9H1J5 351 aa20.42■□□□□ 0.86
COL7A1-205ENST00000465238 MRPL11Q9Y3B7 192 aaKnown RBP20.42■□□□□ 0.86
COL7A1-205ENST00000465238 GRXCR1A8MXD5 290 aa20.41■□□□□ 0.86
COL7A1-205ENST00000465238 CDC27P30260 824 aa20.41■□□□□ 0.86
COL7A1-205ENST00000465238 ADD1P35611 737 aaKnown RBP20.41■□□□□ 0.86
COL7A1-205ENST00000465238 AK2P54819 239 aa20.41■□□□□ 0.86
COL7A1-205ENST00000465238 CCT2P78371 535 aaKnown RBP20.41■□□□□ 0.86
COL7A1-205ENST00000465238 SYTL5Q8TDW5 730 aaPredicted RBP20.41■□□□□ 0.86
COL7A1-205ENST00000465238 NSUN6Q8TEA1 469 aaKnown RBP20.41■□□□□ 0.86
COL7A1-205ENST00000465238 FAM217BQ9NTX9 383 aaPredicted RBP20.41■□□□□ 0.86
COL7A1-205ENST00000465238 PCDHA1Q9Y5I3 950 aa20.41■□□□□ 0.86
COL7A1-205ENST00000465238 PBX2P40425 430 aa20.4■□□□□ 0.86
COL7A1-205ENST00000465238 RAB30Q15771 203 aa20.4■□□□□ 0.86
COL7A1-205ENST00000465238 TBC1D5Q92609 795 aa20.4■□□□□ 0.86
COL7A1-205ENST00000465238 IWS1Q96ST2 819 aa20.4■□□□□ 0.86
COL7A1-205ENST00000465238 TRMT13Q9NUP7 481 aaKnown RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms