RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 ZNF806P0C7X5 589 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 SRFP11831 508 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 NDUFV2P19404 249 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 PRDX5P30044 214 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 NEXNQ0ZGT2 675 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 BTG3Q14201 252 aaPredicted RBP3.28□□□□□ -1.88
USP40-211ENST00000464956 GCKRQ14397 625 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 PTGISQ16647 500 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 TCTN1Q2MV58 587 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 CCDC57Q2TAC2 916 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 BRDTQ58F21 947 aaPredicted RBP3.28□□□□□ -1.88
USP40-211ENST00000464956 PDE12Q6L8Q7 609 aaKnown RBP3.28□□□□□ -1.88
USP40-211ENST00000464956 LLGL2Q6P1M3 1020 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 TSSK4Q6SA08 328 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 SLC4A10Q6U841 1118 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 ARMCX2Q7L311 632 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 RIOX2Q8IUF8 465 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 SPPL3Q8TCT6 385 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 POF1BQ8WVV4 589 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 CASP10Q92851 521 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 CFAP53Q96M91 514 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 MTG1Q9BT17 334 aaPredicted RBP3.28□□□□□ -1.88
USP40-211ENST00000464956 PRMT8Q9NR22 394 aaPredicted RBP3.28□□□□□ -1.88
USP40-211ENST00000464956 PI4KBQ9UBF8 816 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 IL17BQ9UHF5 180 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 GNEQ9Y223 722 aaKnown RBP3.28□□□□□ -1.88
USP40-211ENST00000464956 BPTFQ12830 3046 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 ZNF236Q9UL36 1845 aa3.28□□□□□ -1.88
USP40-211ENST00000464956 FRMPD2Q68DX3 1309 aaPredicted RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 A0A087WV48 116 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 KANSL1LA0AUZ9 987 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 FAM170BA6NMN3 283 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 NCAM2O15394 837 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 KPNA6O60684 536 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 LRRN2O75325 713 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 FLOT1O75955 427 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 GH2P01242 217 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 HOXB7P09629 217 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 CKBP12277 381 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 DNAJB1P25685 340 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 CNR2P34972 360 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 BTDP43251 543 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 CPT1AP50416 773 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 RHBDL3P58872 404 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 STARD6P59095 220 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 FGD1P98174 961 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 PURAQ00577 322 aaKnown RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 UBE3AQ05086 875 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 RBL2Q08999 1139 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 LY6DQ14210 128 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 UBXN2BQ14CS0 331 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 TAF1BQ53T94 588 aaPredicted RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 IQSEC1Q6DN90 963 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 POTEHQ6S545 545 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 ZNF574Q6ZN55 896 aaPredicted RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 CCDC149Q6ZUS6 474 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 CEP68Q76N32 757 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 DZIP1Q86YF9 867 aaKnown RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 KLHL23Q8NBE8 558 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 DBF4BQ8NFT6 615 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 RASGRP4Q8TDF6 673 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 GPR152Q8TDT2 470 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 SEPT8Q92599 483 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 NXPE3Q969Y0 559 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 CRELD1Q96HD1 420 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 EDEM2Q9BV94 578 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 OSBPL6Q9BZF3 934 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 DHX36Q9H2U1 1008 aaKnown RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 SLC32A1Q9H598 525 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 GPCPD1Q9NPB8 672 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 JADE2Q9NQC1 790 aa3.27□□□□□ -1.89
USP40-211ENST00000464956 TEP1Q99973 2627 aaKnown RBP3.27□□□□□ -1.89
USP40-211ENST00000464956 CDK5RAP2Q96SN8 1893 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 RAD50Q92878 1312 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 TEX51A0A1B0GUA7 166 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 C4orf47A7E2U8 309 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 H7C1W4 665 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 AXIN1O15169 862 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 MAP4K4O95819 1239 aaPredicted RBP3.26□□□□□ -1.89
USP40-211ENST00000464956 IFIT1P09914 478 aaKnown RBP3.26□□□□□ -1.89
USP40-211ENST00000464956 LINC00271P0C7V0 271 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 ZNF76P36508 570 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 STAT3P40763 770 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 CHMP4BP1P59074 171 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 JAG1P78504 1218 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 KCNC3Q14003 757 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 TMEM132BQ14DG7 1078 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 RAB3GAP1Q15042 981 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 PTPN14Q15678 1187 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 ZBTB41Q5SVQ8 909 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 KIAA1841Q6NSI8 718 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 ATF7IPQ6VMQ6 1270 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 PRICKLE2Q7Z3G6 844 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 KRT25Q7Z3Z0 450 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 FOXP4Q8IVH2 680 aaPredicted RBP3.26□□□□□ -1.89
USP40-211ENST00000464956 SCUBE3Q8IX30 993 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 CCDC144CPQ8IYA2 1237 aa3.26□□□□□ -1.89
USP40-211ENST00000464956 FAM160A2Q8N612 972 aaPredicted RBP3.26□□□□□ -1.89
USP40-211ENST00000464956 MDM1Q8TC05 714 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms