RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 GSTA1P08263 222 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 SARSP49591 514 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 YWHAEP62258 255 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC6Q16204 474 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 KDM7AQ6ZMT4 941 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 STMN2Q93045 179 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 TBC1D31Q96DN5 1066 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 FMO2Q99518 471 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 PHF20Q9BVI0 1012 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CRYBG1Q9Y4K1 1723 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 TNFAIP3P21580 790 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 LETM2Q2VYF4 491 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 OSBPL9Q96SU4 736 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 ZKSCAN3Q9BRR0 538 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 HPCAL4Q9UM19 191 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 THRAP3Q9Y2W1 955 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 PPP1R37O75864 691 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 SWT1Q5T5J6 900 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 TTC25Q96NG3 672 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC113Q9H0I3 377 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 USP27XA6NNY8 438 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 IPO5O00410 1097 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CEP104O60308 925 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 FDPSP14324 419 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 TRIM65Q6PJ69 517 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CCNI2Q6ZMN8 369 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 BSDC1Q9NW68 430 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 SUGT1Q9Y2Z0 365 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 MYH7P12883 1935 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 MYH6P13533 1939 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 KIF3CO14782 793 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CCT5P48643 541 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 RBBP5Q15291 538 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 TTLL11Q8NHH1 800 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 IGDCC4Q8TDY8 1250 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 PUS7LQ9H0K6 701 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 SPATS2LQ9NUQ6 558 aaKnown RBP7.69□□□□□ -1.18
SYNE1-216ENST00000461872 USP40Q9NVE5 1235 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 ZSWIM5Q9P217 1185 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 KCNQ3O43525 872 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 MCAMP43121 646 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 HSP90AA4PQ58FG1 418 aa7.69□□□□□ -1.18
SYNE1-216ENST00000461872 CTDNEP1O95476 244 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CHRNA3P32297 505 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 FOXO4P98177 505 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 STRN3Q13033 797 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC62Q6P9F0 684 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 RAB11FIP4Q86YS3 637 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 ANKRD35Q8N283 1001 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 MREGQ8N565 214 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 DRC1Q96MC2 740 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 IL9RQ01113 521 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 HERC4Q5GLZ8 1057 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 SMC1BQ8NDV3 1235 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CLIC6Q96NY7 704 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CIB2O75838 187 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 GUCY2DQ02846 1103 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC14Q49A88 953 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 KRT39Q6A163 491 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CCDC85AQ96PX6 553 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 ODF2LQ9ULJ1 636 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 MROH7-TTC4A0A0A0MT08 1334 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 PLA2G4AP47712 749 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 GRM4Q14833 912 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 ZNF365Q70YC5 407 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CEP120Q8N960 986 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 FAM207AQ9NSI2 230 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 GOLGA8QA0A0J9YX86 632 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 GOLGA8OA6NCC3 632 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 SMCO2A6NFE2 343 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 GOLGA8NF8WBI6 632 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 TNNI2P48788 182 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 LRRC24Q50LG9 513 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 TEKT1Q969V4 418 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 SCLT1Q96NL6 688 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 RNF216Q9NWF9 866 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 NOP53Q9NZM5 478 aaKnown RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 THEGQ9P2T0 379 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 MIPOL1Q8TD10 442 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 EXOC3L4Q17RC7 722 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 APBB1IPQ7Z5R6 666 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 SPATA4Q8NEY3 305 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 HOOK2Q96ED9 719 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 EDC3Q96F86 508 aaKnown RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 A1CFQ9NQ94 594 aaKnown RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 FGFR1OP2Q9NVK5 253 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 RIPOR2Q9Y4F9 1068 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 PITPNM2Q9BZ72 1349 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 GTPBP10A4D1E9 387 aaKnown RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 CPP00450 1065 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 AFPP02771 609 aaKnown RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 HPDP32754 393 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-216ENST00000461872 SPATA20Q8TB22 786 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 HPS5Q9UPZ3 1129 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 PCDHB6Q9Y5E3 794 aa7.68□□□□□ -1.18
SYNE1-216ENST00000461872 GMNCA6NCL1 334 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 TULP2O00295 520 aa7.67□□□□□ -1.18
SYNE1-216ENST00000461872 SEC31AO94979 1220 aaKnown RBP7.67□□□□□ -1.18
SYNE1-216ENST00000461872 TROVE2P10155 538 aaKnown RBP eCLIP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms