RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 HHIPL2Q6UWX4 724 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 RUBCNQ92622 972 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 DDX27Q96GQ7 796 aaKnown RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 BPIFA3Q9BQP9 254 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 SH2D4AQ9H788 454 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 MMRN2Q9H8L6 949 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 EHMT1Q9H9B1 1298 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 KCNK9Q9NPC2 374 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 HOMER3Q9NSC5 361 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 CLIC4Q9Y696 253 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 STX17P56962 302 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 IFT88Q13099 833 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 ZBTB17Q13105 803 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 BIRC2Q13490 618 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 TNFAIP1Q13829 316 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 STXBP4Q6ZWJ1 553 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 GBP7Q8N8V2 638 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 VTI1AQ96AJ9 217 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 TSC22D3Q99576 134 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 RAB17Q9H0T7 212 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 RABEP2Q9H5N1 569 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 RNF14Q9UBS8 474 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 CICQ96RK0 1608 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 KRT13P13646 458 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 FDPSP14324 419 aaKnown RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 SCNN1DP51172 638 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 PDCD2Q16342 344 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 STRIP1Q5VSL9 837 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 BLIDQ8IZY5 108 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 OR8K1Q8NGG5 319 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 SREK1Q8WXA9 508 aaKnown RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 FAM163AQ96GL9 167 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 SLF1Q9BQI6 1058 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 IQCGQ9H095 443 aaKnown RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 GPBP1L1Q9HC44 474 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-202ENST00000460333 THEGQ9P2T0 379 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 CTNND2Q9UQB3 1225 aa6.81□□□□□ -1.32
VPS13D-202ENST00000460333 BTAF1O14981 1849 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 KLRF2D3W0D1 207 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CYP2D6P10635 497 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 HDLBPQ00341 1268 aaKnown RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 DLGAP5Q15398 846 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 KRT71Q3SY84 523 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 HSP90AA5PQ58FG0 334 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 KIAA0825Q8IV33 1275 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 NEDD1Q8NHV4 660 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 PANX2Q96RD6 677 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 VIPAS39Q9H9C1 493 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ABCB6Q9NP58 842 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 DONSONQ9NYP3 566 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 KLHL14Q9P2G3 628 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ABT1Q9ULW3 272 aaKnown RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 HMGB1P1B2RPK0 211 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 NDC80O14777 642 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CREB3O43889 395 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 TTLL1O95922 423 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CORO7P57737 925 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 GPATCH4Q5T3I0 446 aaKnown RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 DTHD1Q6ZMT9 781 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ADGRA1Q86SQ6 560 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 TXNRD3Q86VQ6 643 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 FOXP4Q8IVH2 680 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 VSTM4Q8IW00 320 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 MCUR1Q96AQ8 359 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 DYNLL2Q96FJ2 89 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 DBNDD1Q9H9R9 158 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 HOMER2Q9NSB8 354 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 POLLQ9UGP5 575 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 PFKFB1P16118 471 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ELF1P32519 619 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CTNNA1P35221 906 aaKnown RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CCT6AP40227 531 aaKnown RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CRKP46108 304 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ADKP55263 362 aaKnown RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 TBC1D8BQ0IIM8 1120 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 GRM4Q14833 912 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 EMBQ6PCB8 327 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 PIK3AP1Q6ZUJ8 805 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 APLFQ8IW19 511 aaPredicted RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 SYCE1Q8N0S2 351 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ARHGEF10LQ9HCE6 1279 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 PI4KBQ9UBF8 816 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 RABGAP1Q9Y3P9 1069 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 C4BP0C0L5 1744 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ECE2O60344 883 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 PLCD1P51178 756 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 NONOQ15233 471 aaKnown RBP eCLIP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC62Q6P9F0 684 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 CMTR1Q8N1G2 835 aaKnown RBP6.8□□□□□ -1.32
VPS13D-202ENST00000460333 PICK1Q9NRD5 415 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 SCOCQ9UIL1 159 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 DAGLAQ9Y4D2 1042 aa6.8□□□□□ -1.32
VPS13D-202ENST00000460333 ZNF831Q5JPB2 1677 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 PFDN1O60925 122 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 SUN1O94901 812 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 CLTAP09496 248 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 GCFC2P16383 781 aaKnown RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ERCC5P28715 1186 aaPredicted RBP6.79□□□□□ -1.32
VPS13D-202ENST00000460333 ZNF174Q15697 407 aa6.79□□□□□ -1.32
VPS13D-202ENST00000460333 DENND2CQ68D51 928 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms