RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 CDKAL1Q5VV42 579 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 GIMAP8Q8ND71 665 aaPredicted RBP15.26■□□□□ 0.03
CLK3-203ENST00000454830 CYP2W1Q8TAV3 490 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 BLOC1S4Q9NUP1 217 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 CNTNAP1P78357 1384 aa15.26■□□□□ 0.03
CLK3-203ENST00000454830 EDIL3O43854 480 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 FOSP01100 380 aaPredicted RBP15.25■□□□□ 0.03
CLK3-203ENST00000454830 P2RX5Q93086 422 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 POLD4Q9HCU8 107 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 CNOT7Q9UIV1 285 aaKnown RBP15.25■□□□□ 0.03
CLK3-203ENST00000454830 ASTN2O75129 1339 aaPredicted RBP15.25■□□□□ 0.03
CLK3-203ENST00000454830 BICDL2A1A5D9 508 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 POTEFA5A3E0 1075 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 GCOM1H8Y6P7 765 aaPredicted RBP15.25■□□□□ 0.03
CLK3-203ENST00000454830 POLR2MP0CAP2 368 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 POTEIP0CG38 1075 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 USP11P51784 963 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 TSR1Q2NL82 804 aaKnown RBP15.25■□□□□ 0.03
CLK3-203ENST00000454830 POTEGQ6S5H5 508 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 POTEEQ6S8J3 1075 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 GPBP1Q86WP2 473 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 ERMNQ8TAM6 284 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 C7orf25Q9BPX7 421 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 NFKBIEO00221 500 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 DGKZQ13574 1117 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 DNAI1Q9UI46 699 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 QSER1Q2KHR3 1735 aa15.25■□□□□ 0.03
CLK3-203ENST00000454830 ARHGAP6O43182 974 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 PABPC4Q13310 644 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLK3-203ENST00000454830 NELFCDQ8IXH7 590 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 SLFN12Q8IYM2 578 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 TC2NQ8N9U0 490 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 LRRC27Q9C0I9 530 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 CCPG1Q9ULG6 757 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 FZD1Q9UP38 647 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 CCP110O43303 1012 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 ZSCAN12O43309 604 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 ECM1Q16610 540 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 HERC4Q5GLZ8 1057 aaPredicted RBP15.24■□□□□ 0.03
CLK3-203ENST00000454830 ANKRD40Q6AI12 368 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 FAM83AQ86UY5 434 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 NT5C3AQ9H0P0 336 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 NPHP3-ACAD11A0A0J9YXS1 232 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 ALAS1P13196 640 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 CCNE1P24864 410 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 TRAF1Q13077 416 aa15.24■□□□□ 0.03
CLK3-203ENST00000454830 DHTKD1Q96HY7 919 aaPredicted RBP15.24■□□□□ 0.03
CLK3-203ENST00000454830 P2RX7Q99572 595 aaKnown RBP15.24■□□□□ 0.03
CLK3-203ENST00000454830 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.24■□□□□ 0.033e-7■■■□□ 15.1
CLK3-203ENST00000454830 B4DLN1 442 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 DDX39AO00148 427 aaKnown RBP15.23■□□□□ 0.03
CLK3-203ENST00000454830 TERF1P54274 439 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 HAUS3Q68CZ6 603 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 PANK4Q9NVE7 773 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 KDM3AQ9Y4C1 1321 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 FAM86B1E9PN63 330 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 FLOT1O75955 427 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 FAM86B2P0C5J1 330 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 PLA2G4BP0C869 781 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 UNC13DQ70J99 1090 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 GPIHBP1Q8IV16 184 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 MRPL11Q9Y3B7 192 aaKnown RBP15.23■□□□□ 0.03
CLK3-203ENST00000454830 SOWAHDA6NJG2 315 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 TBC1D8BQ0IIM8 1120 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 MTF1Q14872 753 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 ARHGAP27Q6ZUM4 889 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 LDHDQ86WU2 507 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 CNOT6LQ96LI5 555 aaKnown RBP15.23■□□□□ 0.03
CLK3-203ENST00000454830 NOC4LQ9BVI4 516 aaKnown RBP15.23■□□□□ 0.03
CLK3-203ENST00000454830 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.23■□□□□ 0.03
CLK3-203ENST00000454830 HACL1Q9UJ83 578 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 PAXBP1Q9Y5B6 917 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 V9GYY5 206 aaPredicted RBP15.23■□□□□ 0.03
CLK3-203ENST00000454830 COL4A5P29400 1685 aa15.23■□□□□ 0.03
CLK3-203ENST00000454830 TRIM21P19474 475 aaKnown RBP15.22■□□□□ 0.03
CLK3-203ENST00000454830 KRT9P35527 623 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 AGBL1Q96MI9 1066 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 TSG101Q99816 390 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 TUBGCP2Q9BSJ2 902 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 DEFB129Q9H1M3 183 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 DYNC1I1O14576 645 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 LZTFL1Q9NQ48 299 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 PPP2R2CQ9Y2T4 447 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 INPP5BP32019 993 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 TOGARAM2Q6ZUX3 1019 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 CNGA4Q8IV77 575 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 FAM114A1Q8IWE2 563 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 CCDC65Q8IXS2 484 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 KIAA0895Q8NCT3 520 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 HOOK2Q96ED9 719 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 VPS33BQ9H267 617 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 LIMA1Q9UHB6 759 aaKnown RBP15.22■□□□□ 0.03
CLK3-203ENST00000454830 DNM3Q9UQ16 869 aa15.22■□□□□ 0.03
CLK3-203ENST00000454830 MED24O75448 989 aa15.21■□□□□ 0.03
CLK3-203ENST00000454830 FXR1P51114 621 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLK3-203ENST00000454830 GNG11P61952 73 aa15.21■□□□□ 0.03
CLK3-203ENST00000454830 KIF4BQ2VIQ3 1234 aa15.21■□□□□ 0.03
CLK3-203ENST00000454830 FAM26FQ5R3K3 315 aa15.21■□□□□ 0.03
CLK3-203ENST00000454830 NBPF12Q5TAG4 269 aaPredicted RBP15.21■□□□□ 0.03
CLK3-203ENST00000454830 FKBP1CQ5VVH2 108 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms