RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	ELP1	O95163	1332 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	MROH7	Q68CQ1	1323 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	ARVCF	O00192	962 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	LCE2B	O14633	110 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	CFB	P00751	764 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	MYL3	P08590	195 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	EPHB4	P54760	987 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	CHMP4BP1	P59074	171 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	SART3	Q15020	963 aa	Known RBP	10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	PPP2R5B	Q15173	497 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	DUSP28	Q4G0W2	176 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	SEPT14	Q6ZU15	432 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	ANKRD33	Q7Z3H0	272 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	DEFB123	Q8N688	67 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	MORC4	Q8TE76	937 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	COPS5	Q92905	334 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	MAP4K1	Q92918	833 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	FAM161B	Q96MY7	647 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	TAAR1	Q96RJ0	339 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	MYL10	Q9BUA6	226 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	ANO2	Q9NQ90	1003 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	MAD2L2	Q9UI95	211 aa		10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	MRPL11	Q9Y3B7	192 aa	Known RBP	10.09	□□□□□ -0.79
RFX3-209	ENST00000451859	TLR3	O15455	904 aa	Known RBP	10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	ZEB2	O60315	1214 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	PPP1R11	O60927	126 aa	Predicted RBP	10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	EIF2AK2	P19525	551 aa	Known RBP	10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	ANTXR2	P58335	489 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	FPGS	Q05932	587 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	ITGA7	Q13683	1181 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	GRM4	Q14833	912 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	CENPQ	Q7L2Z9	268 aa	Predicted RBP	10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	CATIP	Q7Z7H3	387 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	MCF2L2	Q86YR7	1114 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	RAB11FIP4	Q86YS3	637 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	FAM126B	Q8IXS8	530 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	DNER	Q8NFT8	737 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	SYTL5	Q8TDW5	730 aa	Predicted RBP	10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	RNPC3	Q96LT9	517 aa	Known RBP	10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	TOX2	Q96NM4	488 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	PIGS	Q96S52	555 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	RMDN3	Q96TC7	470 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	ESYT1	Q9BSJ8	1104 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	AMN	Q9BXJ7	453 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	RABGEF1	Q9UJ41	708 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	TBX21	Q9UL17	535 aa		10.08	□□□□□ -0.8
RFX3-209	ENST00000451859	TET1	Q8NFU7	2136 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	EYS	Q5T1H1	3165 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	PALM3	A6NDB9	673 aa	Predicted RBP	10.07	□□□□□ -0.8
RFX3-209	ENST00000451859		B4DLN1	442 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	PPP1R3G	B7ZBB8	358 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	ZBTB5	O15062	677 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	PRC1	O43663	620 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	SORBS3	O60504	671 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	ARIH2	O95376	493 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	TIMP1	P01033	207 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	TXN	P10599	105 aa	Known RBP	10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	MYCL	P12524	364 aa	Predicted RBP	10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	EDNRB	P24530	442 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	HOXA13	P31271	388 aa	Predicted RBP	10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	CYP2C18	P33260	490 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	CPT1A	P50416	773 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	CDK7	P50613	346 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	MRPL12	P52815	198 aa	Known RBP	10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	SLC35G1	Q2M3R5	365 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	PROX2	Q3B8N5	592 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	FAM47C	Q5HY64	1035 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	ARHGEF16	Q5VV41	709 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	CASC1	Q6TDU7	716 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	NFXL1	Q6ZNB6	911 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	MB21D2	Q8IYB1	491 aa	Predicted RBP	10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	ZNF654	Q8IZM8	581 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	SCFD2	Q8WU76	684 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	LRRC2	Q9BYS8	371 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	LSG1	Q9H089	658 aa	Known RBP	10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	TRPV6	Q9H1D0	765 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	PCDHA1	Q9Y5I3	950 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	GRIN2D	O15399	1336 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	UMODL1	Q5DID0	1318 aa		10.07	□□□□□ -0.8
RFX3-209	ENST00000451859	LOC102724159	A0A0B4J2E5	919 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	RBM47	A0AV96	593 aa	Known RBP	10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	OPLAH	O14841	1288 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	SLC27A2	O14975	620 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	B4GALT4	O60513	344 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	CABYR	O75952	493 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	ACR	P10323	421 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	RXRA	P19793	462 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	NKX3-2	P78367	333 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	COL9A3	Q14050	684 aa	Predicted RBP	10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	TTLL4	Q14679	1199 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	PWP2	Q15269	919 aa	Known RBP	10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	LY6K	Q17RY6	165 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	CREB3L3	Q68CJ9	461 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	FCHSD1	Q86WN1	690 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	RGS22	Q8NE09	1264 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	ANKK1	Q8NFD2	765 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	NSUN6	Q8TEA1	469 aa	Known RBP	10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	LY9	Q9HBG7	655 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	PXMP2	Q9NR77	195 aa		10.06	□□□□□ -0.8
RFX3-209	ENST00000451859	POLR3E	Q9NVU0	708 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms