RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 KCNV1Q6PIU1 500 aa17.9■□□□□ 0.46
LIMS1-210ENST00000449684 DHX37Q8IY37 1157 aaKnown RBP17.9■□□□□ 0.46
LIMS1-210ENST00000449684 RASEFQ8IZ41 740 aa17.9■□□□□ 0.46
LIMS1-210ENST00000449684 SLC43A3Q8NBI5 491 aa17.9■□□□□ 0.46
LIMS1-210ENST00000449684 RBM28Q9NW13 759 aaKnown RBP17.9■□□□□ 0.46
LIMS1-210ENST00000449684 ZBTB43O43298 467 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 CD4P01730 458 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 SUPT20HL2P0C7V6 817 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 CASTP20810 708 aaKnown RBP17.89■□□□□ 0.45
LIMS1-210ENST00000449684 EXOSC10Q01780 885 aaKnown RBP17.89■□□□□ 0.45
LIMS1-210ENST00000449684 PPIGQ13427 754 aaKnown RBP eCLIP17.89■□□□□ 0.45
LIMS1-210ENST00000449684 C9orf50Q5SZB4 431 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 CCDC62Q6P9F0 684 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 VSIG10LQ86VR7 867 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 AFG1LQ8WV93 481 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 RNPC3Q96LT9 517 aaKnown RBP17.89■□□□□ 0.45
LIMS1-210ENST00000449684 HIPK3Q9H422 1215 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 PPP4R2Q9NY27 417 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 DDX41Q9UJV9 622 aaKnown RBP17.89■□□□□ 0.45
LIMS1-210ENST00000449684 GRIN2DO15399 1336 aa17.89■□□□□ 0.45
LIMS1-210ENST00000449684 LAMC2Q13753 1193 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 RTN1Q16799 776 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 GNPTABQ3T906 1256 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 GPR153Q6NV75 609 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 APOA5Q6Q788 366 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 TMTC3Q6ZXV5 915 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 JAKMIP1Q96N16 626 aaKnown RBP17.88■□□□□ 0.45
LIMS1-210ENST00000449684 TRPV6Q9H1D0 765 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 ALDH8A1Q9H2A2 487 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-210ENST00000449684 NOD1Q9Y239 953 aa17.88■□□□□ 0.45
LIMS1-210ENST00000449684 KLF18A0A0U1RQI7 1052 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 hCG_1642624A0A1W2PR95 340 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 GOLGA8AA7E2F4 631 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 GOLGA8BA8MQT2 603 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 B4GALT4O60513 344 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 MMP3P08254 477 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 ARHGAP1Q07960 439 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 DGKDQ16760 1214 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 NBPF20Q3BBV1 942 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 USP17L6PQ6QN14 398 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 BLOC1S2Q6QNY1 142 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 HEATR3Q7Z4Q2 680 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 DEFB123Q8N688 67 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 ZFP91Q96JP5 570 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-210ENST00000449684 PSTPIP2Q9H939 334 aa17.87■□□□□ 0.45
LIMS1-210ENST00000449684 KIAA1217Q5T5P2 1943 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 TGFB3P10600 412 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 CSF2RAP15509 400 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 PSMA5P28066 241 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 CYP2C18P33260 490 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 HSPA4P34932 840 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 ERICH6BQ5W0A0 696 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 NFRKBQ6P4R8 1299 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 IL31RAQ8NI17 732 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 MLXIPQ9HAP2 919 aa17.86■□□□□ 0.45
LIMS1-210ENST00000449684 SORBS3O60504 671 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 STAM2O75886 525 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 GGPS1O95749 300 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 EPHB4P54760 987 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 CCL23P55773 120 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 SPATA33Q96N06 139 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 TRMT13Q9NUP7 481 aaKnown RBP17.85■□□□□ 0.45
LIMS1-210ENST00000449684 RTEL1Q9NZ71 1219 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 BRPF3Q9ULD4 1205 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 SNX14Q9Y5W7 946 aa17.85■□□□□ 0.45
LIMS1-210ENST00000449684 SPDYE3A6NKU9 549 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 CPA1P15085 419 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 PTPN11Q06124 597 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-210ENST00000449684 PSRC1Q6PGN9 363 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-210ENST00000449684 Q6ZUG5 572 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 Q7L0L9 218 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 PPTC7Q8NI37 304 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 PPP1R13LQ8WUF5 828 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 EMID1Q96A84 441 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-210ENST00000449684 KATNAL1Q9BW62 490 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 EHMT1Q9H9B1 1298 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 SZT2Q5T011 3432 aa17.84■□□□□ 0.45
LIMS1-210ENST00000449684 LAMA3Q16787 3333 aa17.83■□□□□ 0.45
LIMS1-210ENST00000449684 CCDC196A0A1B0GTZ2 297 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 PIK3CDO00329 1044 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 MEIS2O14770 477 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 RGS20O76081 388 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 ACRP10323 421 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 CYP2C9P11712 490 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 METAP2P50579 478 aaKnown RBP eCLIP17.83■□□□□ 0.44
LIMS1-210ENST00000449684 NAPAP54920 295 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 CELF3Q5SZQ8 465 aaKnown RBP17.83■□□□□ 0.44
LIMS1-210ENST00000449684 XRRA1Q6P2D8 792 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 NLRX1Q86UT6 975 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 RPUSD2Q8IZ73 545 aaKnown RBP17.83■□□□□ 0.44
LIMS1-210ENST00000449684 C7orf31Q8N865 590 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 RETREG2Q8NC44 543 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 GPKOWQ92917 476 aaPredicted RBP eCLIP17.83■□□□□ 0.44
LIMS1-210ENST00000449684 KCNB2Q92953 911 aa17.83■□□□□ 0.44
LIMS1-210ENST00000449684 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.83■□□□□ 0.44
LIMS1-210ENST00000449684 NOC4LQ9BVI4 516 aaKnown RBP17.83■□□□□ 0.44
LIMS1-210ENST00000449684 MTIF3Q9H2K0 278 aaKnown RBP17.83■□□□□ 0.44
LIMS1-210ENST00000449684 NOP56O00567 594 aaKnown RBP17.82■□□□□ 0.44
LIMS1-210ENST00000449684 FIBPO43427 364 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 PPFIA4O75335 1185 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms