RNA–Protein interactions for RNA: ENST00000449510.6

UBE3B-204, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,771 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-204ENST00000449510 CCDC65Q8IXS2 484 aa13.6□□□□□ -0.23
UBE3B-204ENST00000449510 TMEM60Q9H2L4 133 aa13.6□□□□□ -0.23
UBE3B-204ENST00000449510 FBXL5Q9UKA1 691 aa13.6□□□□□ -0.23
UBE3B-204ENST00000449510 PRPF3O43395 683 aaKnown RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 TRIP13Q15645 432 aaPredicted RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 NBPF9Q3BBW0 867 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 INTS8Q75QN2 995 aaKnown RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 PRPF38AQ8NAV1 312 aaKnown RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 ARHGEF2Q92974 986 aaKnown RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 HVCN1Q96D96 273 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 FAM217BQ9NTX9 383 aaPredicted RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 SWAP70Q9UH65 585 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 RASAL2Q9UJF2 1139 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 KNDC1Q76NI1 1749 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 OVOS2A0A0J9YW53 1432 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 OVOS2Q6IE36 1432 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 VWDEQ8N2E2 1590 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 WNT7AO00755 349 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 GLI1P08151 1106 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 EEF2P13639 858 aaKnown RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 ATP11AP98196 1134 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 SLC20A2Q08357 652 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 FAM26FQ5R3K3 315 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 LRRC47Q8N1G4 583 aaKnown RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 SPDL1Q96EA4 605 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 DHTKD1Q96HY7 919 aaPredicted RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 CPSF2Q9P2I0 782 aaKnown RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 ATP6V0A2Q9Y487 856 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 USP31Q70CQ4 1352 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 ZNF131P52739 623 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 SNX1Q13596 522 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 UAP1Q16222 522 aaPredicted RBP13.59□□□□□ -0.23
UBE3B-204ENST00000449510 WDR93Q6P2C0 686 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 ATP6V1G3Q96LB4 118 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 ZNF287Q9HBT7 754 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 KIAA1024Q9UPX6 916 aa13.59□□□□□ -0.23
UBE3B-204ENST00000449510 ZC3H13Q5T200 1668 aaKnown RBP13.58□□□□□ -0.23
UBE3B-204ENST00000449510 PSMD14O00487 310 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 FLOT1O75955 427 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 GCNT3O95395 438 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 H2AFZP0C0S5 128 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 MDH1P40925 334 aaKnown RBP13.58□□□□□ -0.23
UBE3B-204ENST00000449510 MAN2A1Q16706 1144 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 H2AFVQ71UI9 128 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 GPBP1Q86WP2 473 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 NBPF5PQ86XG9 351 aaPredicted RBP13.58□□□□□ -0.23
UBE3B-204ENST00000449510 CELF4Q9BZC1 486 aaKnown RBP13.58□□□□□ -0.23
UBE3B-204ENST00000449510 VIPAS39Q9H9C1 493 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 AMFRQ9UKV5 643 aa13.58□□□□□ -0.23
UBE3B-204ENST00000449510 PALLDQ8WX93 1383 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 SFI1A8K8P3 1242 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 SEMA3EO15041 775 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 FGGP02679 453 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 TRADDQ15628 312 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 SMIM5Q71RC9 77 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 PARP9Q8IXQ6 854 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 KIF2BQ8N4N8 673 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 THAP9Q9H5L6 903 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 PANK4Q9NVE7 773 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 GFPT2O94808 682 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 ACSL3O95573 720 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 ELF1P32519 619 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 NEK8Q86SG6 692 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 HOOK3Q86VS8 718 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 ADSSL1Q8N142 457 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 TRIM6Q9C030 488 aaPredicted RBP13.58□□□□□ -0.24
UBE3B-204ENST00000449510 SLC40A1Q9NP59 571 aa13.58□□□□□ -0.24
UBE3B-204ENST00000449510 LDHBP07195 334 aaKnown RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 MMEP08473 750 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 HIBADHP31937 336 aaKnown RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 STX2P32856 288 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 CYP2J2P51589 502 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 FAM47EQ6ZV65 393 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 TMTC3Q6ZXV5 915 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 CCDC13Q8IYE1 715 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 LARP4BQ92615 738 aaKnown RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 EPN3Q9H201 632 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 NKIRAS1Q9NYS0 192 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 ARMCX3Q9UH62 379 aaPredicted RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 CHORDC1Q9UHD1 332 aaPredicted RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 TPX2Q9ULW0 747 aaKnown RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 CPDO75976 1380 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 CCDC160A6NGH7 325 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 NR2F2P24468 414 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 MDM2Q00987 491 aaPredicted RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 PABPC4Q13310 644 aaKnown RBP eCLIP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 DIXDC1Q155Q3 683 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 NUGGCQ68CJ6 796 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 ALKBH5Q6P6C2 394 aaKnown RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 FMNL3Q8IVF7 1028 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 MED15Q96RN5 788 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 TSKSQ9UJT2 592 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 ANO9A1A5B4 782 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 RAD51CO43502 376 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 PDHA1P08559 390 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 ATP2C1P98194 919 aaPredicted RBP13.57□□□□□ -0.24
UBE3B-204ENST00000449510 FAM83BQ5T0W9 1011 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 PCDHA4Q9UN74 947 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 PCDHA12Q9UN75 941 aa13.57□□□□□ -0.24
UBE3B-204ENST00000449510 CEMIPQ8WUJ3 1361 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms